Polyodon spathula (Mississippi paddlefish): 121297710
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Entry
121297710 CDS
T07273
Name
(RefSeq) PDZ and LIM domain protein 3-like isoform X1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121297710
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
121297710
Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
121297710
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
121297710
NCBI-ProteinID:
XP_041080095
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Position
2:complement(49997834..50015843)
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AA seq
391 aa
AA seq
DB search
MPQNVTLQGPAPWGFRLTGGNDFNQPLTISRITPGSKASLANLCPGDIILSIDGVTTESM
THCEAQNMIKDSTNQLNLKIKRPETKLWSPQVTEGGKAHPFKINLEAEQQEFKPIGAAHN
RRAQPFVAAASIDDKRQVVSSAYNTPIGLYSSGNIQDALHGQIRGLIQDKPEGGCKKPPH
AVARIITPSDLKVTMKGSPQKTWVAELPGVRIQHAQFNSPIQLYSDANIMNSLYGQASAT
LTEKPAFSVEPTPSIEQSHVYKMLQENQDEYHEPRQSGSFRALQDYVEDDPGSRPSGTRS
VRAPITKVGGPTGSVQKLPLCDKCGKGIVGTIVKARDKFRHPECFVCSDCNMNLKQKGYF
FVEGQLYCETHARSRMRPPEGYDAVTVYPTA
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgccacagaatgtaactttgcaaggtccagccccttggggattcagactgactggtgga
aatgattttaatcagccattgactatatcaaggattactccaggaagcaaggcatcacta
gccaacctttgccctggtgacatcattctttccattgatggtgtaacaacagaaagcatg
actcattgcgaagctcagaatatgattaaggattccacaaatcagctgaatctgaagatc
aagagaccagaaaccaagctttggtctcctcaagtgacagaaggtggtaaagcccatcct
tttaaaatcaatttggaagctgaacagcaagagtttaaaccaatcggtgctgctcataat
aggagagcccagccatttgtagctgcagccagcattgacgataaaaggcaggtagtgagt
tcagcctacaacactcctataggcctgtactcttccggcaacatccaggacgccctccat
ggacagatacgaggcctcattcaagacaaaccagaaggtggatgcaagaagcctccccat
gcggttgctcgcatcatcacccccagcgatttaaaggttaccatgaaagggtctcctcaa
aagacctgggtggcagagctgccaggggttaggattcaacatgcccagtttaactccccc
atacaattgtactcagatgccaatattatgaactctctatatggacaggcgtctgccact
ttaactgaaaaacctgctttcagtgttgaaccaacgccatcgatcgagcagtcacacgtg
tacaaaatgcttcaggagaatcaagatgaataccatgagcctcggcagtctggctccttc
agagctctgcaagattatgtggaggacgatcctggttctcgtcccagtggcactagaagt
gtgagagctcccatcacaaaggttggtggacccaccggaagtgttcagaaactgccactg
tgcgacaaatgtggcaaagggattgtcgggaccattgtgaaggcccgtgataagtttcgc
caccccgaatgctttgtgtgctctgactgtaacatgaatctgaagcagaagggctacttc
ttcgtggagggacagctgtactgtgagacccacgccaggtctaggatgaggcctcccgag
ggatatgatgctgtcactgtttaccctacagcctaa
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