Polyodon spathula (Mississippi paddlefish): 121297760
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Entry
121297760 CDS
T07273
Name
(RefSeq) RNA-binding protein 39-like isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121297760
Spliceosome [BR:
pspa03041
]
Common components
Common spliceosomal components
General mRNP proteins
121297760
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_MUD2_C
RRM_occluded
DUF8400
RBD_DEAH11
RRM_7
Ig-CFAP74_2
RSRP
Dsh_C
Motif
Other DBs
NCBI-GeneID:
121297760
NCBI-ProteinID:
XP_041080178
LinkDB
All DBs
Position
23:complement(26616583..26626700)
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AA seq
562 aa
AA seq
DB search
MADDFDIEAMLEAPYKKTCLTISHLYSHEFTFDSSVNCQTDENKSSSANGYEERSKKKKK
SRSKSRSRSRDRKRSKSRDRKKSRERKTSKSRERKRSRSKERRRSKSRSRERGGRYRARR
SPFAGPKFNGGTRGKIGPPPTIKLSRRRSRSKSPFKKDKSPVREPIDNLTPEERDARTVF
CMQLAARIRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVEASSVPLAIGLTGQ
RLLGVPIIVQASQAEKNRAAALANNLQKGNAGPMRLYVGSLHFNITEEMLRGIFEPFGRI
ESIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERTDASNAS
SFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSIAFGAMAAVTDL
QARLTQPPDAAMNPGLNLALNLNPAMTLPTQPLATQCFQLSNMFNPQSEDDPEWDVEIQD
DVIEECNKHGGVVHIYVDKNSPQGNIYVKCPTISAAMAAVSGLHGRWFAGKMITAAYVPL
ATYHNLFPESVMATQLLMPIRR
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgatttcgatattgaagccatgcttgaggctccttacaagaagacttgccta
acgatatctcacctctactcccatgaattcacctttgattccagtgtgaactgtcaaaca
gatgagaacaagtcaagtagtgccaatggatatgaggagcgcagtaagaagaaaaagaag
agtagaagtaaaagtcgcagcaggagccgcgacaggaagaggagcaaaagccgggatcgt
aagaagagccgcgagagaaagacgagcaagagtcgtgagaggaagcgcagccggagcaag
gaacgccgccgcagcaagtcacgaagcagagagaggggaggccgataccgagcacgcagg
agtccatttgctgggccgaaatttaacggtggcaccagagggaagattggcccaccacct
accatcaaactaagtaggagacgttctagaagcaaaagcccatttaagaaagacaagagt
cctgtgagggagcctattgataatctaacccctgaagaaagagatgcacggacagtattt
tgtatgcagctggcagccagaattcgaccacgagatctggaagagttcttttcagcagtg
ggaaaggtgagagatgtgaggatgatttctgacaggaactcgagaagatcaaaggggatt
gcttatatagaatttgtggaagcaagttctgtgccactggcaattggccttactggtcaa
aggctgttgggagttccaatcattgttcaagcatcacaggctgagaagaacagggcagca
gctttagccaacaacttacaaaagggtaatgctggaccaatgagactctatgtgggatct
ctgcacttcaatatcactgaggaaatgcttcgaggaatctttgagccttttggcaggatt
gaaagtattcagttgatgatggacagtgaaactggacgttcaaaaggatatggcttcatt
acattttcagatgcagaatgtgctaaaaaggctttggaacagttgaatggatttgagctg
gctggcagacctatgaaagtgggacatgtgactgagcgcactgacgcatcaaatgcaagt
tcattccttgacagtgacgagctggaaagaactgggattgaccttggaactactggtcgt
ttgcagttgatggccaggcttgcagaaggtactggtttacagatcccaccggcagctcaa
caggcccttcagatgagcggatcaatagcctttggtgctatggcagctgtaacagattta
caagccaggcttacccaaccacctgatgctgctatgaatcctggcttgaacttagccctg
aacctgaaccctgctatgaccttaccgacacagcctcttgcaacacagtgcttccagctg
tccaatatgttcaacccacagtcggaggatgatccagaatgggatgtagagattcaagat
gatgtaattgaggagtgcaacaaacatggaggcgttgtacacatttatgttgataaaaat
tcaccacaaggcaatatttatgtgaagtgtcctactatttctgctgccatggctgctgtt
agtggattacatggaagatggtttgctggtaaaatgatcactgctgcctatgttccactt
gcaacctaccacaaccttttcccagagtctgtgatggctactcagctgctgatgcctatt
cgccgatga
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