Polyodon spathula (Mississippi paddlefish): 121297774
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Entry
121297774 CDS
T07273
Name
(RefSeq) U3 small nucleolar RNA-interacting protein 2-like isoform X1
KO
K14793
ribosomal RNA-processing protein 9
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pspa03009
]
121297774
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
90S particles
Other 90S particles
121297774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
WDR55
EIF3I
Beta-prop_EML
Beta-prop_CAF1B_HIR1
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_IP5PC_F
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
WDR54
Beta-prop_WDR75_2nd
Beta-prop_Vps41
WD40_like
Motif
Other DBs
NCBI-GeneID:
121297774
NCBI-ProteinID:
XP_041080206
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Position
23:9010048..9021962
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AA seq
476 aa
AA seq
DB search
MSSFFIKKKGNTKPDKKAESGTKRKASANGEGKGRAKKMTSRHNEEISSDSEPDSPAVEK
KVRVPEDEEIEETAQEKKLRLAKLYLEQLREEEEEKAEQEDFEKDLIAGRLQEDVLEQRG
KLQRFVAKDYQPPDIADIRLLRGHQLPVTCLVISPDDKQVFSAAKDCSIIKWEVESGKKL
HTIAGGRKGTEDRHVGHTAHILCMAISSDGKYLATGDRNKLIMIWEAVPCKHLYTFTGHR
DAVSGLSFRKGTHQLYSASHDRSIKVWNVDENAYVETLFGHQDVITGLDSLSRERCVTTG
GRDRTVRVWKIAEESQLVFNGHEGSIDCIQLINEEHMVTGADDGSIAVWSVGKKKPLVTV
KQAHGCHGDGGLEQPYWISSVAALQNSDTVASGSNNSKVQLWKCGEGFRNLQPLFSIPLT
GFVNSLKFSNSGNFLVAGVGQEHRLGRWWRIKEAKNGLYIIPLKKQNSEQDITRSK
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctttctttatcaaaaagaaaggaaataccaaacctgacaaaaaagcagaaagt
ggaacaaaacgaaaggcttctgcaaatggagagggaaaagggcgagccaagaaaatgact
tccagacataatgaagagatctccagtgactctgaacctgacagccctgcagtggaaaag
aaagtgagagtcccagaagatgaagagattgaggagacggcccaggaaaagaagttgcgg
ttggctaaactctaccttgaacagttgagagaagaggaagaggaaaaggcagagcaggaa
gattttgagaaagatctaattgctggcagactccaggaagatgtgctggaacagagagga
aaactccagcgatttgttgccaaagactatcagcctcctgatattgccgatatccgcttg
ctgaggggccaccaactgcctgtcacctgtcttgtcatctcgcctgacgataagcaagtt
ttttcagctgctaaagactgctcaattattaaatgggaagttgagagtggaaagaagctt
cacacaattgctggagggaggaaggggacagaggacagacatgttgggcacacggcacac
atcctctgtatggcaatatcctctgatggcaaatacctggctacaggtgacagaaacaag
ttaataatgatctgggaggcagtaccttgtaaacacctctacacgttcacaggtcacaga
gacgcagtgtcgggcttgtcgttcaggaaaggtacgcaccaattatacagtgcctcacat
gaccgctctatcaaagtgtggaatgttgatgaaaatgcctacgtggaaacactatttggc
caccaagacgtgatcaccggtctggacagtctgagcagagagcgctgcgtgacgacaggg
ggtcgcgatcggacagtcagggtctggaaaattgcagaagagtcccaactagtttttaat
ggccatgagggatctattgactgtatccaattaataaatgaagagcatatggtaactgga
gcagacgatgggtcaattgctgtgtggagtgttggcaagaagaaacctctggtcacagtg
aagcaggcccatggttgccatggggatggaggcctggagcagccatattggatctcttca
gtggcagcacttcagaatagtgatactgtagcttcaggttccaacaattcaaaggttcag
ctatggaaatgtggagaaggttttcgcaatttacaacctctcttcagtattcccctgact
ggttttgtgaacagcctaaaattctcaaactcaggaaattttcttgtagctggggtcggg
caagagcacagattaggcagatggtggaggataaaagaagccaagaatggactttatatc
attcccctaaagaaacaaaactcggaacaagacataacaaggagcaaataa
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