Polyodon spathula (Mississippi paddlefish): 121297850
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Entry
121297850 CDS
T07273
Symbol
usp4
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 4 isoform X1
KO
K11835
ubiquitin carboxyl-terminal hydrolase 4/11 [EC:
3.4.19.12
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pspa01002
]
121297850 (usp4)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121297850 (usp4)
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
121297850 (usp4)
Peptidases and inhibitors [BR:
pspa01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
121297850 (usp4)
Ubiquitin system [BR:
pspa04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
121297850 (usp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
Ubiquitin_3
DUSP
USP7_C2
UCH_1
USP7_ICP0_bdg
Motif
Other DBs
NCBI-GeneID:
121297850
NCBI-ProteinID:
XP_041080323
LinkDB
All DBs
Position
23:9192006..9208642
Genome browser
AA seq
1039 aa
AA seq
DB search
MAEGGGTEPGSGAEPDSEPVPASDIQKQTMGALLKTQLRKGDKWFLIDSRWFKQWKKYVG
FDSWDMYNVGEQTLYPGPIDNSGLFSEPEKQTLKEHLIDELDYVLVPTEAWHKLMSWYGC
VEGQRPIVRKVVEHGMFVKHCKVEVYLLELNLCENDNMDDLVKRHFSKADTIDTIEKDMR
ALFNISADKEIRLWNKYMSNTYEQLNKPDSTVQDAGLFQGQVLVIEKKNEDGTWPRQTSY
TKSSTATSRNLTTSSKLPSNSTATISSTITNGDSNNSSYTLNNSTSSSNRLGGYSSYGSS
YSYREPQTQPGLCGLSNLGNTCFMNSALQCLSNAAPLTEYFLQDEYEAEINRENPLGMRG
EIAEAYADLVKQMWSGRCSYVAPRTFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDL
NRVKKKPYLALKDAEGRPDEIVAKEAWTNHRLRNDSIIVDTVHGLFKSTLVCPECSMVSV
TFDPFCYLTLPLPMKKERTMEVFLVRADPQSRPMQYRVVVPKLGTVADLCTTLSKLSGVL
ADNMVVADVYNHRFHKIYRRDEGLNHIMDRDDIFLYEVEELEGEKVSLPIYFRERRMKHT
GSSTGTVLFGQPLLISFPKQNLTVDLLYERVLERIGRYVKRPQVTGCEGKATAAAGSSSA
SGRSSTSSSSSSPTSQAAESAGCPSQAAELGVCGCEQAEAPSCSGGPTETASSSSSSSQP
SQTGTSNGPNGMCEGEDEEMEHQEVARPNQDILIEPDNDQSEGSVRGEDCEDPENESIAG
VQKTSAKSANCLAKLFTFSMVNSYGTADISSLASDNTVLKLNAQSTVAIDWDSESKKLYY
DDQEAEAYEKHDSMLQHQKKKATVALRDCIELFTTMETLGEHDPWYCPTCKKHQQATKKF
DLWSLPRILVVHLKRFSYNRCWRDKLDTVVDFPVRDLNMSEFVCDPKAGPYIYDLIAVSN
HYGGMGGGHYTAYAKNKADEKWYYFDDSSVSSASEDQIVTKAAYVLFYQRRDNKSSQSMP
SSASVGKAPEEGEDRMDTN
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggcggagggaggcggaactgaaccgggcagcggggccgagcccgactccgaaccggta
ccagcttccgatatccaaaaacaaaccatgggagccttgcttaaaacgcagctccgcaag
ggcgacaaatggtttctgattgatagtcgttggtttaagcaatggaagaagtatgtgggc
ttcgacagctgggacatgtacaatgtgggggagcagacattgtatcctgggcccattgat
aattcggggctattttcagaacccgagaagcagactctgaaagaacacctaatagatgag
ctagactatgttctggtgcctactgaggcctggcacaagctcatgagctggtatggctgt
gtggaaggacagcgacccattgtcagaaaggtagtagagcacgggatgtttgtaaaacac
tgtaaagtggaagtctatcttctggagctcaatctctgtgagaacgacaacatggatgac
ttggtgaaacgacatttcagcaaggctgataccatagacacaattgaaaaggatatgagg
gcattgttcaatatctctgctgacaaagaaatccgtctctggaacaagtatatgagcaac
acttatgaacaactgaacaagccggacagcactgtgcaggacgctgggctctttcaggga
caggtgcttgtgatagaaaaaaagaatgaagatggcacatggcctaggcaaacaagctac
acaaaatccagcacagccacctccaggaatttaactacctcctcgaagcttccgtccaac
tccactgccaccatctcctctaccataaccaatggagacagtaataactccagctacacg
ctgaacaatagcaccagctccagtaacaggttgggtggatacagttcctatggctcatca
tacagctaccgagaaccccagacacagcctggcctctgcgggctcagcaacctgggcaac
acctgcttcatgaactctgctttgcagtgcctgagtaatgcagcccccctgacagaatat
tttctccaggatgagtatgaggcagagataaaccgggaaaaccccctggggatgcgaggc
gagatcgctgaagcttatgcagacctggtcaagcagatgtggtctgggcgctgcagctat
gtagcacccaggacattcaagacccaggtgggccgctttgcaccccagttttcaggatac
cagcagcaggactcccaggagctgctggcctttctgctggacgggcttcatgaggacctc
aaccgtgtcaaaaagaagccatacttggcactgaaggatgctgagggaaggccagatgag
atagtggcgaaggaagcctggacaaatcaccggcttcgtaacgactccatcattgtggac
acagttcacggactcttcaagtccactctagtgtgtcccgagtgctccatggtctcagtc
acctttgaccctttctgctacctcacactgccactgcccatgaagaaggagcgcaccatg
gaggtgttcctggtgcgcgcagacccccagtccaggcccatgcagtacagggtagtggtc
cccaagctgggcactgtggctgatctatgcaccactctgtcgaaactgtctggcgtgcta
gctgacaacatggtggtagcagatgtgtacaatcaccggttccataaaatctaccgccgt
gacgagggactgaatcacatcatggacagagacgatatctttttgtatgaggtggaagag
ctggaaggggagaaagtcagcctgcctatatactttagggagaggcgtatgaagcacaca
ggctcctccacaggcactgtcctatttgggcaaccccttcttatctcgttccccaagcag
aacctcactgtggacttgctgtacgaaagggtgctggagagaattggccgctatgtgaaa
aggccgcaggtcacaggctgtgaggggaaagccaccgcagcagctggcagtagcagtgca
agtggacggagcagcactagcagtagcagcagcagccccactagccaggctgcagagtca
gcagggtgccccagccaggcagcagagctgggagtgtgtggttgtgaacaagcagaggca
ccatcatgcagtgggggacccacagagacagccagcagcagcagcagcagcagccaacca
tcccagacagggaccagcaatgggccgaacgggatgtgtgaaggagaagatgaggagatg
gaacatcaggaggtagcgaggccaaaccaagatatcctcatagaacctgataacgaccaa
tcagagggctctgtaaggggagaggattgcgaggacccagaaaatgagtctatcgctggt
gtccaaaaaacttcagccaagtcggctaactgtctggcaaagctgttcactttcagtatg
gtgaactcgtacggcacagccgacatcagctcacttgccagcgataacacagtcctcaaa
ctcaacgcacaatccacagttgcaattgactgggattctgaatctaagaagctatactat
gatgaccaggaggcagaggcctatgagaaacatgacagcatgttgcagcaccagaagaag
aaggcgacagtagctctaagagactgtatcgagctctttaccaccatggagacgctagga
gaacatgacccctggtattgcccaacctgcaagaagcaccaacaggccacaaaaaaattt
gatctgtggtcccttccacgcattctggtcgtccatctgaaacgtttctcttataaccgc
tgctggagagacaagctggatacagtggtagacttcccagtcagggacctgaacatgtct
gagtttgtctgtgacccaaaggcagggccctacatatatgacctcatcgctgtttccaac
cactatggggggatgggtggtgggcattacaccgcctatgccaaaaacaaggctgatgag
aaatggtattactttgatgacagtagtgtctcttctgcctcagaggatcagattgtgaca
aaggcagcatacgtgctgttttaccagcgtcgggataacaagtcaagccagagcatgcct
tcctcagcctctgtgggcaaagctccagaggagggggaagacagaatggacaccaactga
DBGET
integrated database retrieval system
