Polyodon spathula (Mississippi paddlefish): 121297977
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Entry
121297977 CDS
T07273
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1-like isoform X1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pspa01009
]
121297977
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121297977
Protein phosphatases and associated proteins [BR:
pspa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121297977
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
121297977
mRNA cycle factors
Stress granule specific factors
121297977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Staufen_C
dsrm
DND1_DSRM
Dicer_dsRBD
TcdA1_RBD_3
Motif
Other DBs
NCBI-GeneID:
121297977
NCBI-ProteinID:
XP_041080569
LinkDB
All DBs
Position
23:complement(19411953..19429101)
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AA seq
697 aa
AA seq
DB search
MSQVQVQNSSPVLLSAGSPMQSTPQPLNPAVYQSVMSIPSASGPLPSENAGHPIKNSALP
SASATPINSAAVPNMANPKEKTPMCLVNELARFNKIQPEYKLLSEQGPAHSKVFTVRLTL
NEQYWEAEGTSIKKSQHAAAARALAETTLPKPSVRPPRHTGKNPDSVTHTVELNALCMKL
GKKPIYKPTDSYHGMRPNFNYNVRPPGPYPRYYYPFSSVGPVLYQMELSIGGQLFHGKGR
TRQAAKHDAAAKALKALQKEPLLEKDLQVNGEVSSDENLNKSEISQVFEIALKRNMPVNF
EVLRETGPPHMKSFVMKVSVGDFSGNGEGKSKKIAKKNAAAAVLEELRKLCPLPSVEKVH
PRIKKKTRSIVKLQTSPEYGQGMNPISRLAQIQQAKKEKEPEYSLVTERGLPRRREFIMQ
VQICDQTAEGMGPNKKVAKRNAAEKMLELMGFKVPQPQPTKPALKNDEKVPVKKPGDGRK
VTFFEPGSVEDRARGNREDDFRMPYMSHQQLPAGILPMVPEVAQAVGVSQVHHTKDYSRP
PINPAKATITAMIARELLYGGTSPTAETLLKSNNNLVHLPHGPLTRPSEQLDFLTKVQGL
QVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSELNQQTHD
RSGNGPISVCGKQEMESERLLKQANSNPMGKTLDGTA
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagttcaggtccagaactcttcccctgtcctcctgtctgctgggagccccatg
cagagcactcctcagcccctgaatcctgcagtctaccagtctgtgatgagtatcccttct
gcttctgggcctctgccctctgaaaacgccggccatcctatcaaaaactctgccctcccc
tccgcttctgccactcccatcaattcagctgcagttcctaacatggcaaaccccaaagag
aaaaccccaatgtgtctcgtgaatgagttagcccgctttaacaagattcagcctgagtac
aaacttttgagtgagcaaggaccagctcactccaaggtgtttacagtgcggctgactcta
aatgaacagtattgggaagctgagggaaccagcattaagaagtctcagcatgcagcagcc
gccagagccctggcagaaaccacgctcccaaagcccagtgtccgcccccctcgccacaca
ggcaagaatccagacagcgtgacccacacagtggagctaaatgcactctgtatgaaactt
ggaaagaagcccatttacaagcccactgactcatatcatggaatgaggcccaatttcaac
tacaacgttaggccccctggcccctatccaaggtactactacccattctcctcagtaggg
ccagtgctgtaccagatggaattgtcaattggggggcagctgttccatggcaaaggaaga
accagacaagctgcaaagcatgacgcagccgccaaagcgctgaaagccctccagaaagag
cccctgctggaaaaggatctccaggtcaatggggaagtgtcttctgatgagaacctcaac
aaatctgaaatcagtcaagtgtttgaaattgcactgaagaggaacatgcctgtgaacttt
gaggtgttgagggagactggtcccccacacatgaagagctttgtaatgaaagtatctgta
ggagacttttccgggaatggggaaggcaagagcaaaaagattgccaagaagaacgctgct
gctgctgtgctggaggagctgaggaaactctgtccgcttcccagtgtggagaaagtacat
ccccgcattaaaaagaaaactaggtccatagtcaagttgcagactagcccagaatatggg
cagggaatgaaccccattagccgtctggctcagatccagcaagccaagaaagagaaagag
cccgagtacagcctggtcacagaaagggggcttcctcggcgcagggagttcatcatgcag
gttcaaatttgtgaccaaaccgcagaagggatgggtcccaacaagaaggtggctaagcgc
aatgcagctgagaagatgttggagctaatgggatttaaagtgcctcagccacagcccaca
aaacctgcgctcaaaaatgatgaaaaggttccagtgaagaaacctggagatggaagaaaa
gtgaccttctttgagccaggctctgttgaggacagagctagaggtaacagagaggatgac
ttccggatgccatacatgagccaccagcagcttccagctgggatcctgcctatggtccct
gaagtggcccaggcagttggggtcagccaagtacatcacaccaaagactacagccgcccc
ccaatcaacccggccaaggccaccatcacagcaatgattgccagggagctcctgtatggg
ggcacctctcctactgctgagacgttactgaaaagcaacaacaacctggtgcaccttcca
cacggaccgctcacccgaccctccgaacagctcgacttcctgaccaaagtgcaggggctg
caggtcgagtataaagactttcctaaaaacaacaaaaatgagtttgtgtctctgataaac
tgctcctcccagccacccctgatcagtcatggaataggaaaggatgtggagtcctgccat
gatatggctgctcttaatatactgaagctgctgtcagagctgaaccagcaaactcatgac
agatctggaaatggaccaatttctgtatgtggaaaacaagaaatggaaagtgagcgtctt
cttaaacaggctaactctaaccccatgggcaaaacactggatgggaccgcgtga
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