Polyodon spathula (Mississippi paddlefish): 121298071
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Entry
121298071 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121298071
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121298071
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
121298071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Sina_ZnF
Prok-RING_4
zf-TRAF
LemA
PDZ_Tricorn
zf-rbx1
RING_XB3-XBAT31
U-box
TRAF2_zf
Motif
Other DBs
NCBI-GeneID:
121298071
NCBI-ProteinID:
XP_041080789
LinkDB
All DBs
Position
23:complement(7964129..8059764)
Genome browser
AA seq
1055 aa
AA seq
DB search
MGFELDRFNGDVDPDFKCNVCNQVLEDPLATPCGHVFCAGCVLPWVVQQNSCPVKCQRIS
TKELNHVLPLKNLILKLDIKCDNHARGCEKVVKLQHLAEHTEMCDYSPAKCRNKGCNEVL
NLKDMDAHMRETCDYRPVGICEKGCGLVLIYKEQALDTHCCFKALKAHNSALQGKMVDLD
KEFKKQSLKSSKREKSLLAQLSSVQNELQVTALKYQKKFTEYSARIDSLTKSLAPQCKGE
ETKTLKAALHRDSGSLGFNIVGGRPDNQDGSLNEGIFVSKIVENGPADKEGGLQIHDRIM
EVNGKDLSKATHEQAVEAFRTAKDPIVVQVLRRAPRTKMLNPAHESQLLDTGTQTDITFE
HIMALVKRTTPTPPAAVLEQYLLPEEHSPGHEYYDPNDFLEGMHQDMEREELEYEEVDLY
RLNSQDKLGLTLCYRTDDEDDTGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNREE
AVSLLTREDNKNVSLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMRFTASML
QQKKIDEDGGTTDTATILSNQHEKDSGLGRTDESTRNDESSEQENMGDDHTTSSNTLGSR
KKMTYSHDTLGSGDMQFSNESFISADYTDADFLGIPADECERFRELLELKCQVKSANQYS
LYYHTSAMDMNKSDQESVDKELEMLNEELRNIELECLNIVRAHKMQQLKEQYRDSWMLHN
SGFHNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEMSPDNSLRRTD
DVNSQGNEGVVANSTGPNGTAPKASLSQAGGQESSSVKSRSSSSKDSSKQSEGKERKTTD
TSKTSKAGNLSYQHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDPTS
PSQLEPKMEWKVKIRSDGTRYITKRPVRDKLLKERAIRIREERSGMTTDDDAVSEMKMGR
YWSKEERKQHIVRAKEQRQRREFMKQSRQDCLKEQGSGEEKKEVNIIELSHKKMNKKRNK
KVFDNWMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagctggatcgttttaatggggacgtggaccctgatttcaaatgcaatgtg
tgcaatcaagttttggaggatccgcttgcaactccgtgtggtcatgtcttctgcgctggc
tgtgtcttaccgtgggttgtccagcaaaacagctgccccgtaaagtgccaaaggatttct
acgaaggaactgaaccacgttctccctctgaaaaacctaatactgaagctggacatcaag
tgtgacaaccacgctaggggctgcgagaaagtggtgaagttgcagcatttagcagagcac
acagagatgtgtgactattctccagccaaatgcaggaataagggatgcaacgaagtcctc
aatttaaaagacatggatgcccatatgagagaaacgtgtgattatagacctgttgggatt
tgtgagaaaggatgtggtttggtcttaatctacaaagagcaggcattagatacgcattgt
tgttttaaagctttgaaggctcataatagcgcgttgcagggtaaaatggtagatttggat
aaggagtttaagaaacagtctctgaaatcaagcaagcgggagaaatctcttctggctcag
ctctcatctgttcaaaatgagcttcaagtgacagctctgaaataccaaaagaaattcaca
gagtacagcgcaaggatcgactctctgactaaaagcctggctcctcaatgcaagggagaa
gagactaaaacccttaaagctgcccttcatcgtgattctggatctctgggatttaatatt
gttggtggcagaccggacaaccaagatggttctttgaatgaaggaatctttgtgtccaaa
atagtggagaatgggccagctgacaaggaaggaggactgcaaatccatgacaggattatg
gaggtcaatggtaaagatttgtccaaggcaactcatgaacaggcagtcgaagctttcagg
acagccaaggatccaatcgtggttcaagttctacgaagagctcctagaaccaaaatgctc
aaccctgcccatgagtctcagctgctggatacaggcacgcagactgacataaccttcgaa
cacatcatggctcttgtaaagcgcaccactcccaccccacccgcggcagtacttgagcaa
tacctgttgccagaagaacattcgccaggacatgaatattatgacccaaatgacttcttg
gaaggtatgcaccaggacatggagagagaagagttggaatatgaggaagtggacttgtac
agacttaacagccaagacaagcttgggctcacactgtgctatagaactgatgatgaagat
gacacagggatctatgtgagcgagattgatccaaatagcattgctgcgaaagatggccga
atccgagaaggagatcgaattatccagattaatggaatagagattcagaacagggaggaa
gcggtgtcacttctgaccagagaagacaacaagaatgtgtctctcctcgtagccaggcct
gagattcagctggacgaaggatggatggatgatgacaggaatgactttcttgatgatttg
cacatggatatgctggaggagcagcatcatcaggctatgcgatttactgccagcatgctt
cagcagaaaaagatcgatgaggatggaggaactacagacacggctacaattttatccaac
cagcatgagaaagacagtggattggggcgtactgacgagagcacccgcaacgatgagagc
tcagagcaggagaatatgggagacgaccacaccacttcatccaacactttaggcagtcgc
aaaaaaatgacttacagccatgacactctgggaagtggggatatgcagttcagcaatgag
tccttcatatctgccgattacacagatgcagactttctggggattcctgcagacgaatgc
gaaagatttcgagagcttcttgagctgaagtgccaagtgaagagtgcaaaccagtacagc
ctttattatcacaccagtgcaatggacatgaataaaagtgaccaggaaagtgtagacaag
gagttggagatgctgaatgaagagttgagaaacattgagctggaatgcctgaacattgta
cgagcccacaagatgcagcagctgaaagagcagtaccgagactcctggatgcttcacaac
agcggcttccacaactacaataccagcattgacgctcgcagacatgagctgtctgacatc
acagagctaccggaaaaatcagataaggacagctcaagtgcttacaatactggggagagc
tgcaggagcactcctcttacactggagatgtcccctgacaactctctccgcagaactgat
gatgtcaacagccagggcaatgaaggggttgtggccaatagcacagggcccaacggaaca
gcgccaaaggcttctctgtcccaagctggaggccaagagtcgagctctgttaaatcccgc
tcctcttcctctaaggattccagcaagcagtcagagggaaaggagaggaaaactacagac
accagcaagacttcaaaagctggtaacttatcctaccagcactctccgtacaagcatgct
cacatcccagctcacgcccagcactatcagagttacatgcagttgatccagcagaagtca
gcagtagagtatgcccagagccagatgagcctggtcagcatgtgcagagaccccacttct
ccaagccaactggaacctaagatggagtggaaggtaaagatcaggagcgatgggacgcgg
tacatcactaagaggccagtgagggacaagctgctgaaggagcgtgcaataaggatcaga
gaggagcgcagcggcatgacgacagacgatgacgcagtcagcgagatgaaaatgggccgc
tactggagcaaggaggagcgcaaacagcatatagtacgagcgaaggagcagaggcagaga
cgagagttcatgaagcagagcagacaggattgtctgaaggagcagggcagtggagaggag
aaaaaggaggtgaatattattgaactgagccacaaaaagatgaacaagaagaggaacaag
aaagttttcgacaattggatgacgattcaagaactgttaactcacggcactaaatcccca
gatggaacgagagtatacaattcccttttatctgtaaccactgtgtaa
DBGET
integrated database retrieval system
