Polyodon spathula (Mississippi paddlefish): 121298078
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Entry
121298078 CDS
T07273
Name
(RefSeq) pre-mRNA-processing factor 6-like
KO
K12855
pre-mRNA-processing factor 6
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121298078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121298078
Spliceosome [BR:
pspa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121298078
Complex C
U5 SnRNP specific factors
121298078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
Suf
HAT_Syf1_CNRKL1_C
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_16
TPR_17
TPR_2
TPR_8
FAT
TPR_CcmH_CycH
TPR_1
TPR_21
ARM_TT21_N
T7SS_EccA1_N
ARM_TT21_C
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
121298078
NCBI-ProteinID:
XP_041080814
LinkDB
All DBs
Position
23:23234696..23255525
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AA seq
1013 aa
AA seq
DB search
MASKTTGPPGRGGGGGGGGRGRGGGGVAAGGSGGGRGGGAGGSGGGRGGGTGGSGGGGSL
TSSLSAAGAASAMTGTLKKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPV
DDRHAPPGKRTVGDQMKKVEDEEEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYSA
LDKRMDERRKERRELREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDAR
NKRQRNPRHEKLTPVPDSFFAKHLQSGEKNTSVDPRQTQFDSLNAFPGGLSSPFPGGMTP
GLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDI
NDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLE
AARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALENVSKSVLLWK
AAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARRVLNKARENIPTDRHIWI
TAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVVTCQAVIKA
VIGIGIEEEDCKHTWMEDAESCISHGALECARAIYAHALQVFPSKKSVWLRAAYFEKNHG
TRESLEALLQRAVAHCPKAEVLWLMGAKSKWQAGDVPAARSILALAFQANPNSEEIWLAA
VKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQDLCCEALKHYEDF
PKLWMMKGQIEEQTENMDKAREAYNQGLKKCPQSMPLWLLLSSLEEKAGQLTRARAILEK
SRLKNPQNPELWLESVRLEYKAGLKNIANTLMAKALQECPNSGILWAEAVFLEARPQRKT
KSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIEPDLGDAWAFFYKFELQH
GTEEQQGEVMKRCENVEPRHGELWCEQSKHILNWQKKIGEILVLVAAKIKNTF
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgaaaacaacaggaccgcctggcagaggtggcggcggcgggggtggaggtaga
ggtagaggaggaggcggtgttgctgccggtggaagcggaggaggcagaggcggtggtgct
ggtggaagcggaggaggcagaggcggtggtactggtggaagcggtggtgggggaagctta
acgtcaagcctatccgcagctggtgcggcatcagccatgaccgggacgctcaaaaagaag
aagaagccctttctgggcatgccagcaccactgggatacgtaccggggctcggcagaggt
gctactggtttcaccacacgttctgatatcggtcctgcccgagatgccaatgacccggtg
gacgatcgccatgctcctccagggaagaggaccgtgggggatcagatgaagaaggtggag
gatgaagaggaggatctcaatgacaccaactatgatgagtttaatggctatgctggtagc
ttgttttcaagtgggccgtatgaaaaagatgacgaagaggcagatgctatttattcagcg
cttgataagagaatggatgaaaggagaaaggaaagaagggaactgagagagaaggaggaa
atcgagaagtaccgtatggagcgtcccaaaattcaacagcagttttccgatctgaagagg
aagctggccgaggtcaccgaggaagagtggctcagtattcctgaagttggcgatgcccga
aacaagcggcagaggaacccacgccatgaaaaactgactcctgtaccggacagcttcttc
gccaaacacttgcagtctggagaaaaaaacacgtctgtagatccgaggcaaacgcaattt
gatagtttgaacgctttccctggtggtttgagttctccttttccggggggaatgacccct
ggactgatgaccccagggacaggggagctggacatgaggaagatcggccaggccaggaac
accttgatggacatgcggctcagtcaggtgtctgattctgtgagcggacagacagttgtg
gaccctaagggttacttgactgatctgaactctatgatcccaactcacggaggggatatt
aatgatattaagaaggccaggctgctgctgaagtctgtgcgtgaaacgaacccgcaccac
ccccctgcctggatcgcctcggctcgactggaggaggtcacaggcaagctgcaggtcgcc
aggaacctcattatgaagggcacggagatgtgcccaaagagtgaagacgtgtggctggaa
gcagcccgtttgcagcctggggacactgcgaaggctgtggtggctcaggctgtccggcac
ctgcctcagtctgtccggatttacatccgagcagccgagctcgagacagacatccgggcc
aagaaacgtgtcctccggaaagccctcgagaatgtttctaagtcggtgcttctctggaaa
gcggctgttgaactggaggagcctgaagatgccaggattatgctcagcagggctgtagag
tgctgtccaaccagtgttgagctttggttggccctcgccagactggagacctatgagaac
gccaggagggtgttgaacaaagctcgtgaaaacattcccactgaccgtcatatctggatc
actgccgccaagctggaagaagccaatggtaacactcagatggtggagaagatcattgac
agagcgatcacctctctccgggccaacggagtcgaaatcaacagggaacagtggattcag
gatgcagaggagtgcgataaggctggcagcgtggtaacttgccaggctgtcatcaaagcc
gtgatcggcatcgggattgaagaggaggactgtaagcacacatggatggaagatgcagaa
agttgcatttcccatggtgccctggagtgcgcacgagccatttatgcccacgctctgcag
gtcttccccagcaaaaagagtgtgtggctgagagcagcatactttgagaagaaccacgga
accagggagtctttagaggcactgttacagagggctgtggctcactgcccgaaggctgag
gtcctgtggctgatgggtgcaaagtcgaagtggcaagcaggtgatgtccctgcagccaga
agtattttggcactggcttttcaggcaaatccgaacagcgaggaaatttggttggctgct
gtgaagcttgagtctgaaaacaatgaatatgaaagagcaagaaggcttttggcaaaagcc
agaagcagcgcccccactgcaagggtgtttatgaagtctgtgaagctagagtgggtgttg
ggaaatatcgctgcagcccaggatctttgctgtgaggctttgaaacattatgaagacttc
cctaagctgtggatgatgaaggggcagatcgaggagcagactgaaaacatggacaaggct
cgagaggcttacaaccaggggctgaagaagtgcccacagtccatgcctctctggctgctg
ctgtccagcctggaagagaaagccgggcagcttaccagagccagagccatcctggagaaa
tctcgtctgaaaaacccccagaacccagagctctggctggagtctgtaaggctggaatac
aaagccggtctcaagaacattgcgaacacactgatggccaaggcactccaagaatgtccc
aactctggaatactttgggctgaagcagttttccttgaagctagaccacaaagaaagacc
aagagtgtagatgctttaaagaaatgtgaacatgatccacatgtcttactggcagttgca
aagttgttctggagtgaacgaaagataaccaaagccagagagtggtttcacaggacagtt
aaaattgaacccgatttgggagatgcctgggctttcttctacaagtttgaattgcaacat
ggaactgaggagcagcagggggaggtgatgaagcgctgtgagaatgtggagccgcggcac
ggggagctatggtgtgagcagtccaagcacatcctcaactggcagaagaagatcggagag
atccttgtcctcgtggctgcaaaaatcaagaacacattctga
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