Polyodon spathula (Mississippi paddlefish): 121298129
Help
Entry
121298129 CDS
T07273
Name
(RefSeq) microphthalmia-associated transcription factor-like isoform X1
KO
K09455
microphthalmia-associated transcription factor
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04137
Mitophagy - animal
pspa04142
Lysosome biogenesis
pspa04916
Melanogenesis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
121298129
04137 Mitophagy - animal
121298129
09150 Organismal Systems
09152 Endocrine system
04916 Melanogenesis
121298129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121298129
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
Ubiquitous bHLH-ZIP factors
121298129
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MITF_TFEB_C_3_N
DUF3371
HLH
Motif
Other DBs
NCBI-GeneID:
121298129
NCBI-ProteinID:
XP_041080906
LinkDB
All DBs
Position
23:7391258..7434182
Genome browser
AA seq
564 aa
AA seq
DB search
MQSESGIVPDFEVGEEFHEEPKTYYELKSQPLKNSNSSEQPGSSKPPLSSSTMTSRILLR
QQLMREQMQEQERREQRQKQQAAQYMQQRTTSSQTPAINVSIPTSLPTATPVPMEVLKAC
DLVSAVPACMGPHKAGLNEHLLKRNSKVQTHLENPTKYHIQQAQRQQVKQYLSTTLGNKL
PNHALSLPCTNQPIEHVMHPGPGSSAPNSPMAMLNLNNCEKESLYLQMDDVIDDIIGLES
SYNDDILGLMDPGLQMANTLPVSANLLDMYSNQAMPPPGLNISNSCPANLPNIKREFTVT
PAPAMMHILENSGSCGSFESYQRPEGFPVEAEARALAKERQKKDNHNLIERRRRFNINDR
IKELGTLIPKSNDPNMIPKSNDSDMRWNKGTILKASVDYIRKLQREQQRSKELENRQKKL
EHANRHLMLRIQELEMQARAHGLSVVASTSLCSSELSPRIIKQESAQGDCNQEVYHHHPD
LSHTTTLDLTDGTITFSDSLGHIHESGAYTVATKVGSKLEDMLMDDTLSPVGATDPLLSS
VSPGASNNSSRRSSVSMEENDRGC
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgcagtctgaatcggggatagtacccgattttgaagtcggcgaggaattccatgaagaa
cctaaaacgtattacgaactgaaaagccagccgttgaaaaacagtaattcatcagagcag
ccggggtcctccaagcccccgttgagctcttccactatgacgtcacggatcttgctacgg
cagcagctcatgcgtgagcaaatgcaagagcaggagcgtcgagaacagaggcagaagcag
caagcggcacagtacatgcagcagagaaccacaagcagtcagacaccagccatcaacgtc
agcatccccaccagcctgcctactgcaacaccggtaccaatggaagtcctcaaggcttgt
gacctggtctccgctgtgccagcctgtatgggtcctcacaaagctgggctgaatgaacac
cttttaaaaagaaacagtaaggtgcaaacacaccttgaaaacccaaccaagtaccacatt
cagcaggcccagaggcagcaggttaagcagtacctctccaccactcttggaaacaagctt
cccaaccatgccctcagcttgccctgtaccaatcaacccattgagcatgtaatgcatccg
ggacctgggagcagtgcccccaacagccccatggccatgcttaacttgaacaactgtgaa
aaagagagtttgtatttacagatggatgatgtcattgatgacataatcggtttggagtca
agctacaatgatgacatccttggacttatggacccaggactacaaatggccaacacgctc
cctgtttctgctaatcttcttgatatgtacagtaatcaagcgatgccaccacctggcctt
aatatcagcaactcctgtccagctaatctacccaacattaaaagggaattcacagttacc
ccagctcctgccatgatgcacattctggagaattctggatcgtgtggcagttttgaaagc
tatcaaaggccagaaggttttccagtagaggctgaagctagagccttagcaaaggaaaga
caaaaaaaggacaatcataacttaattgaacgaagaaggaggtttaacattaatgatcgt
attaaagagctgggaactttgattccaaagtcaaatgatcccaatatgattccaaagtca
aatgattcggacatgcgttggaacaaaggcaccattttgaaagcgtctgttgactatatc
cgtaaactccaaagagagcagcaacgatcaaaggaacttgagaaccgacagaagaagctg
gaacatgccaacaggcacctcatgctaagaatccaggagcttgagatgcaagcccgggct
catggactgtctgttgtggcctcaacaagtctgtgctcctccgaactttcaccaaggatc
attaaacaagagtcagcgcaaggagactgcaatcaggaggtttatcatcaccatccagac
ctgtcccacaccacaaccctcgatcttactgatgggactatcaccttcagtgacagcctt
ggacacatacatgagtccggagcctacactgtagccacgaaagtgggctccaaactagaa
gacatgttgatggacgatactctttcccctgtgggagcgactgacccattactctcgtca
gtgtcgcccggagcttctaacaacagcagcaggagaagcagcgtaagcatggaggagaac
gaccgtgggtgttag
DBGET
integrated database retrieval system
