Polyodon spathula (Mississippi paddlefish): 121298189
Help
Entry
121298189 CDS
T07273
Name
(RefSeq) TATA element modulatory factor-like
KO
K20286
TATA element modulatory factor
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121298189
Membrane trafficking [BR:
pspa04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
121298189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
ATG16
Motif
Other DBs
NCBI-GeneID:
121298189
NCBI-ProteinID:
XP_041081060
LinkDB
All DBs
Position
23:complement(7291796..7300720)
Genome browser
AA seq
1122 aa
AA seq
DB search
MSWFNATHLSSFAKQAFTTAQKSIDRVLDIKEEDQWGDTVMPSYDVPGTGSSASGGWGTT
QWASPPEESIISGSTEAITTPVTRTVVDESEHFFSTFLSSTDLQSVKNTPVVSIPPTKVP
RPKEGNKEISGTSHSRHTDLVETTGMLEIKAPTDPRPENIELTKSDLDVATGGQETVIQE
TLKECKEECVNEEKISDNSEIKIEFSEAKLNRSVLPTSTRTKATAGSPPDSPTKPHTASS
KDLILDSKDAKSEDRQSNTPSPPVSTFSSGTSTTSDIEVLDHDSVISESSASSRQESNES
KASLHLMQTSFQLLSTSACSDFQRLDDYQMLTQSSGSSDAFERIDSFSMQSLDSRSVSEI
NSDDELPGRACTLASFTTNPTASTPLAANPDESKSEELNDTVKDRSLEENEMEESCRSAT
PVNCEEPEELVESDQASSVFCTVTDEHKQTPVHPTCEEGQANPIYHNLELQKVIDDLRIR
LEKRETQILAVSKDKARLEEEYDNLKDEMINLKEECCSVQSLKEEFTQRIADAEKKAQLA
CKERDALKKEVKTLKEELSTRLNSNETAEIMKEKDEQIRGLLEEGEKLSKQQLHNSNSIK
KLRMKDKENESLLSKQSKKIKELEEELKHLQQVLDGKEEVERQHRESIKKLNSVVERQEN
ELSRHQTDLEEFQETNRSLQAALDNSYKELAELHRAYATKDSKAQEAALSREIQAKEQLS
VALEKAQEESRMQQEVLAMQVGDLRLALQRAEQQQGRKEDYLREEISELQQRLQGAETRN
QELSQSITSATRPLLRQIENLQATLGAQTTSWEKLEKNISDRLGDAQAQLAAAVEKERAA
TEELLTIKSQMATIESQNSLMRQEKSRLQVQLESEKSKREKLEDESSREQVELENVKADY
TRLLEESKKQKMLLTSQLEMEKLKVEQEKKKYFLVQEALKEKERKAFVHLALEATTSATP
TLSRSSSISGVDMASLQSSFLAQDDALDHSFGPMTTSASGSNLYDAVRMGAGSSVIENLQ
SQLKLREGEIMQLQFEISNLEKTRTVMAEELVKLTNQNDELEDQVKEIPNLRVQLRDLDQ
RYNTILQMYGEKAEEAEELRLDLEDVKSVYKIQIDELLKTKK
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgagttggtttaatgcaactcacttgtctagttttgccaaacaggcttttacgacagct
cagaaatcaatcgacagagttttggacatcaaagaggaagaccaatggggtgacactgta
atgccttcatatgatgtacctggaacaggttcttcagcaagtggggggtggggtaccact
cagtgggcatctcccccagaagaatccataatttctggatctacagaagcaatcacgacc
cctgtcacaaggaccgttgtggacgaatctgaacatttcttcagtacctttttatcttca
acagacctacaaagtgtcaaaaatactccagtggtttcaatacctcctacaaaagtgcca
aggcccaaagagggtaataaagaaataagtggaacttcacattctaggcacacagatttg
gttgaaacaactgggatgctggaaataaaagccccaactgaccccagacctgagaatatt
gaactaacaaagtctgatttggatgtggctactggaggacaagaaaccgtaatacaggaa
acactaaaagagtgcaaggaggaatgtgttaatgaagaaaaaataagtgataactcagaa
ataaaaatagagttttctgaagcgaaactaaaccgatctgttttgcccaccagtacaaga
acaaaggcaactgccgggagtcctccagacagccccacgaagccacacacagcctcctca
aaagacttgatactggattcaaaagatgccaaatctgaagacaggcagagcaacacgcct
tcgcctcctgtcagcactttctcttcaggaacgtcaacaacgagtgacattgaggtgctt
gaccatgacagtgtcataagcgagagctcagccagttcaagacaagagtctaacgaatcc
aaagctagcttgcacttaatgcagacgtcttttcagcttttgtcaacttctgcctgctca
gacttccagcgcctggacgactatcagatgctcacgcagagctctggctcctcggatgct
tttgagagaatcgactctttcagcatgcaatcccttgatagtcggagtgttagtgaaata
aactcagatgatgaattgccaggccgagcttgcaccttggcttcatttaccaccaacccc
actgcttcaactcctcttgcagcaaatccagatgaaagcaaaagtgaagaactgaacgac
accgtgaaagacaggtcactggaagagaatgaaatggaagagagttgtcgcagtgcaact
cctgttaattgcgaagaacctgaagaattggtagagtctgatcaggcaagttcagtattc
tgcacagtgactgatgagcacaaacagactccagtccaccctacgtgtgaggaaggccag
gcaaacccaatttatcacaatctggaattgcaaaaggttattgatgatctgaggatcaga
cttgaaaagagagaaacccagatattagctgtcagtaaagacaaagcaagactggaagaa
gaatatgacaatcttaaagatgagatgataaacctgaaggaggaatgctgcagtgttcag
tctcttaaagaagagtttacccagcgaatcgctgatgctgaaaagaaagcacagttagcc
tgcaaagagagggatgctttgaagaaggaagtgaaaacacttaaagaggaactatccaca
agacttaattcaaatgagacagctgaaattatgaaggagaaggatgagcaaatcaggggt
ctgcttgaagaaggtgaaaaactttccaaacagcaacttcacaattccaacagcataaag
aagctgagaatgaaggacaaagaaaacgaaagcctgctctcgaaacaaagcaaaaagatc
aaggagttagaagaggagctaaagcatttgcagcaggtgttggatggcaaagaggaagtg
gaaaggcagcaccgtgaaagcattaagaagctgaacagtgtggtcgagaggcaggagaat
gagctgagcaggcaccagacagacctggaggagtttcaagagacaaaccgcagcctccag
gcggctctggataattcctacaaggagcttgcagagttgcacagagcatatgctaccaag
gacagtaaagctcaggaggctgcacttagccgggagatacaggccaaggagcagttgagc
gtggcgctggaaaaggcccaggaagagtcaagaatgcaacaggaggtcttagcaatgcag
gtaggagacctgaggttggctttgcagagagcagagcagcaacaaggtagaaaggaggat
tatctccgtgaagagatcagtgaattacagcagagacttcaaggagcagaaactcgtaac
caagaactgagccagagtattacatcagcaacaagaccattgctccgacagattgaaaac
ctacaggcaacgcttggggcacaaaccacctcctgggagaaactggagaagaacatctca
gataggcttggtgatgctcaagcacaactggcagctgcagtggagaaagagcgtgccgct
acagaagagcttcttacaataaaatcccagatggcaactatagagtcccagaatagcctc
atgcgccaagagaagagccgtctgcaggttcagctggagtcagagaaatccaagcgagag
aaactggaggatgaaagcagcagggagcaggtagagttggaaaatgtgaaggctgactac
acgagattactggaggaatctaaaaagcaaaagatgcttctaacaagtcagttagaaatg
gagaaactgaaggttgagcaagaaaagaagaaatattttctagttcaagaagcattaaag
gaaaaggaaagaaaagcctttgttcatcttgccctggaagcaactacttcagcaactcca
accttatcccggtcaagctctatcagtggggttgatatggcaagcttacagtcgtccttc
cttgcacaggatgatgcccttgatcactcatttggaccaatgaccacatctgctagtgga
agtaatctttatgatgctgttcggatgggggcaggatccagcgttattgaaaacctgcag
tctcagctgaagctacgggaaggggagataatgcagcttcagtttgaaatttcaaaccta
gaaaaaacacggacagtaatggcagaggagttggtgaaattaaccaatcaaaatgatgaa
cttgaagatcaggtgaaggaaattcccaatctgcgtgtccagctaagggacctggaccag
agatacaacaccattttacagatgtatggtgagaaagcagaagaagcagaggaacttcga
cttgacctagaagatgtgaagagcgtgtacaaaatccaaatagatgaacttttgaaaaca
aagaaataa
DBGET
integrated database retrieval system
