Polyodon spathula (Mississippi paddlefish): 121298191
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Entry
121298191 CDS
T07273
Name
(RefSeq) probable ATP-dependent RNA helicase DHX35
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121298191
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121298191
Spliceosome [BR:
pspa03041
]
Complex C
Other components
Complex C specific factors
121298191
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
ABC_tran
AAA_19
nSTAND3
Cas3-like_C_2
AAA_7
AAA_30
Motif
Other DBs
NCBI-GeneID:
121298191
NCBI-ProteinID:
XP_041081063
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All DBs
Position
23:complement(23617420..23628598)
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AA seq
699 aa
AA seq
DB search
MAAPWSAMKFWKPGTEGPGLGLNEEREGAAEVGGSVVYNPHASLSIEKQRQKLPVFKHRN
YILYLLENYQTVVIVGETGCGKSTQIPQYLLEAGWAAEGKVVGVTQPRRVAAVSVAGRVA
EERGALLGHEVGYTIRFDDCSDAHATRIKFLTDGMLVREMMADPLLKKYSVLMLDEAHER
TLYTDIAIGLLKKIQKKRGDLRLIVASATLNAEQFRDFFNLNESGNPSKDTCGILTVEGR
TFPVDVFYTMSPVPDYVKATVETVMKIHESEGDGDVLAFLTGQEEVERVVSMLVEQSRAL
SRSGMKKHLRALPMYAGLPYSEQMKVFERVPHTVRKVVVATNIAETSITINGVVFVIDCG
FVKLRAYNPKTAIESLVVAPVSQASASQRAGRGGRIRAGKCYRLYTEEDFEKLPPSTVPE
MQRTNLAPVILQLKALGIDNVLRFSFLSPPPAQSMVQALELLLALGGLDEHGRLTEPLGM
RMAEFPLIPMFAKMLLESGSFGCSEEIVTIAAMMQIQNVFVSPPSQKKPAARKHRKFAVA
EGDHLTMLNVYEAFVKNHRSSQWCQEHFLNYKGLQRAAAVREQLWRLLSKFRVPKKSSEG
DPEVILRCIVSGFFANAARLHHSGAYRTLRDDHELHIHPTSVLYAEKPPKWVVYNEVMQT
SRHFLRDVSAIESSWLVELAPHFYRRGTHSSGSKRTKVV
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccctggtccgcaatgaagttctggaaacctggaacggagggtccaggtctc
ggtctcaatgaggaacgcgagggggctgcagaggtcggcggctctgtcgtctacaaccct
catgcctcattgtccatcgagaaacagaggcagaagcttcccgtgttcaagcacagaaac
tatatcctgtatctgttggagaactatcaaactgtagtgatcgttggagaaacagggtgt
gggaaaagcactcagattcctcagtatctcctggaggctggatgggctgcagaggggaaa
gtggtgggagtgacccagccacgaagggtggctgcagtctcggtggctggccgtgtagct
gaggagagaggggcattgctgggccatgaggttggatacacaatacggtttgatgactgt
tctgatgcccatgccacacgcatcaagttcttgaccgatggaatgctggtgagagaaatg
atggcggatcctttattaaagaaatacagtgtcctgatgcttgacgaggctcatgaacga
accctctacacagacatcgctatcggacttctcaagaagattcagaagaagcgcggagat
ctgcgactgattgtggcgtcagctactctaaatgccgagcaatttcgggatttctttaac
ctgaatgagtctggaaatcccagtaaggatacctgtggtattctaacagtggaggggagg
acattccctgtggatgtcttctatacaatgagcccagttcctgactatgtgaaggccaca
gtggagacagtgatgaagatccacgagtctgaaggagatggggatgtcctagcattcctc
accggacaggaggaggtggagagagtggtgtccatgctggtagagcagtcccgggccctg
tcccgttcagggatgaagaagcacctacgagctcttcccatgtacgcaggcctgccctac
tctgagcagatgaaggtttttgagagggtgccccatactgtgcgcaaggtggttgttgcg
accaacattgcagagacctccatcactataaacggcgtggtgttcgtcattgactgcggg
tttgtgaagctgagagcctacaaccccaaaacagccatcgagtccctggtagtggctcct
gtctcccaggcgtcggccagtcagagagcaggaagaggcggcagaatccgggctgggaag
tgctaccggctctacacagaagaagactttgaaaagttacccccatcgacagtgcctgag
atgcagcgcactaacttggcccctgtgatcctgcagctgaaagccctggggatagacaac
gttctgaggttcagcttcttgtctcctccccctgcccagtccatggtacaggctctggaa
ctgctgcttgcacttggagggttagatgagcacggccgactgactgagccactgggaatg
cggatggctgaattccccctcattcccatgtttgcgaagatgttgctggaatcggggagt
ttcggctgctctgaagagattgtgaccatcgcagccatgatgcagatccagaacgtgttc
gtgtctcctcccagccagaagaagccagctgccaggaagcacaggaagtttgccgtagca
gaaggggaccatctgaccatgctgaatgtttatgaagcctttgttaagaatcacaggagc
tcgcagtggtgccaggagcacttcctcaactacaaagggctgcagagagccgcagctgtg
agggagcagctctggagactgctgagcaagttcagagtacccaagaagtccagcgaaggt
gacccggaggttattctgcgctgcatcgtctcggggttctttgccaacgcggccaggctt
caccattcaggggcgtacaggacgcttcgagatgatcatgagctgcatattcatcccacc
tctgtgctctacgcggagaagccacctaaatgggtagtgtacaatgaggtgatgcagaca
tccaggcacttcctgcgggacgtgtctgcaatagagtcctcttggctggtggaactggcc
cctcatttttaccggaggggaacgcattcatcgggttcaaagagaacaaaagtagtttga
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