Polyodon spathula (Mississippi paddlefish): 121298240
Help
Entry
121298240 CDS
T07273
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121298240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121298240
03036 Chromosome and associated proteins [BR:
pspa03036
]
121298240
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121298240
Coactivators
SAGA/TFTC/STAGA complex
121298240
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
121298240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
tRNA-synt_1c
Motif
Other DBs
NCBI-GeneID:
121298240
NCBI-ProteinID:
XP_041081172
LinkDB
All DBs
Position
23:complement(24760001..24775013)
Genome browser
AA seq
1015 aa
AA seq
DB search
MAAGSELLDEVFFNTEVDEKVVSDLVGSLESQLAGSGHGNSENRGSVVGNHIVSAGVGGN
ANVQESKMGLAQDLAKAGSGVQGGVINNTRSQGSAILHATTEITSSAGSEASLGLSHGKS
VVVSAMGTPVPNHGAGSGKTGTSAVQTLNGSNVAMNSHSSGSTAATFAGTPAAASICKSS
GSAPAVTAVNNGPGSVVKGNVNTVLPATSNTVIQTSFFNAQSATSTVITSPTTTLGTGPT
VTLVRPPMHTTGPGTTQNGNNTVLSSTINVANLPATVGSGISLQTSLVNSNPSPASVCAS
IATHVVKPESPKTIIQTAPQAMAPSAVANAGNLSLGQPMHSGLQTVPTQQPCAPAGISKG
PVVQNVPRTSTPAAVANSPGAIRAIVPQVLAPRMAQTPQNQPNIQNIQLPPGMVLVRSDS
GQLLMIHQQTLAQMQAQSQNAMTPRPATPTSTPPVQLQAPGTPMIARQVTPTTIIKQTSS
AQTTVQSTTTLQRPPVVQPQIVLGGASTTASVGAASPVQPGTPQRTVAGTTGATSTETLE
NVKKCKNFLSTLIKLASSGKQSSETAANVKELVQNLLEGKIEAEDFTSRLYRELNSSPQP
YLVPFLKRSLPALRQLTPDSAAFIQQSQLQQPSSQTSTALTTVVLGSSVQRSAGKATATL
TSTPQPGHTKPGQLTPQVLQSQQQGTVVRPSQVTLTQTPMVTLRPPHNRIMLSTPQHVQL
KPLQTVTVLPGNKGLPPGFSQASAAQRKKLNEAAGGSFRDDDDINDVASMAGVNLSEESA
RILATNSELVGTLTRSCKDEAFLSTASLHRRLLEIGKKFGIIELGPDVVSIVSHATQQRL
QSLIEKVTEIAQQRNIVYKEDERYEQISDVRSQLKFFEQLDQIEKQRKEEQEREILMKAA
KSRSRQEDPEQLRLKQKAKEMQQQELAQIRQRDANLTALAAIGPRKKRKVGSPGPGAATE
GSGSSGSLSGSPSVAAARQFTRQRITRVNLRDLLHCLENESETSHSHLLYQAFLK
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggctcagagttgctggatgaggttttctttaacacagaggtggatgaaaaa
gtagttagcgacctagttgggtccctggagtctcagcttgcgggttcgggtcacgggaac
tccgagaatcggggctcggtcgtggggaaccacattgtcagtgcgggagtaggaggtaat
gctaatgtccaagagagcaaaatgggacttgcacaagacctggcgaaagcagggtctgga
gtgcaagggggtgttattaataacacaaggtcccagggttcagcaatactacatgcaaca
acagagatcacttcatctgcagggtctgaggcatcgctcggactcagccacggcaagtct
gtggttgtcagtgccatgggaacccctgtgcccaaccacggagcgggcagcggcaaaacc
ggaacgtctgcagtgcaaactttgaatgggagtaatgtagcgatgaactctcacagttca
ggaagtactgcagccactttcgctgggacgccagcagccgccagtatttgcaagagcagc
ggcagtgcacctgctgtcacagcggtcaacaacggacctggatcggttgtaaaaggaaat
gtaaatactgttttacctgccacctcaaacactgtcatccaaacctctttttttaatgca
cagagtgctacttcgactgtaattacgtctccgacaacgactttaggaaccggacctacc
gtaacacttgtgaggccccctatgcacacaaccggaccgggcacgacgcaaaatgggaat
aataccgttttaagttcgaccattaatgtagctaacctgcctgcgaccgtgggatctggg
atatcgttacagacttctcttgtaaacagcaacccgtccccagcaagcgtgtgtgccagc
attgcaacgcacgtagtcaagccggagtctcccaaaactatcatacaaactgcaccgcaa
gcaatggcaccaagcgcggttgcaaatgcaggcaatttgtctcttggtcaacctatgcac
tccgggcttcagactgtgcccactcagcagccctgcgcacctgcaggaatcagcaagggt
ccggttgtccaaaacgtaccgaggacttccactccagcagcagttgctaacagtcctggc
gcgatacgagcaattgttccacaggttttagccccccgcatggctcaaacaccacaaaat
cagccaaacatccagaacatacagctgcctccagggatggtgctggtgcgcagtgacagc
ggccagttattgatgatccaccagcagactctcgctcaaatgcaggcccagtcccagaac
gccatgactccgcgccccgccacgccgaccagcactccccctgttcagctgcaggcccct
gggacacccatgattgccaggcaggtgacgccaacgaccatcatcaagcagacctcttca
gcccagaccacagtgcagtccaccaccacactacagagacctcctgtcgtgcagccccag
attgtgctaggcggggcctccacaactgcttcagtaggagcagcgtccccagtgcagcca
ggaacaccacagagaacagtagcggggaccacaggggccacttccacggaaaccttggaa
aatgtgaaaaaatgtaagaactttctgtcgacgttaattaagctggcatcaagtggaaag
cagtcctcagagacagctgctaatgtgaaggagctggtgcagaacctgttggaaggaaaa
attgaagcagaagattttacaagcaggctttacagggaactcaattcttcacctcaacca
tatcttgtgcctttcttgaagaggagtctacctgccttgcgccagctcaccccggactct
gcagcattcatccagcagagccagctccagcagcccagcagtcagaccagcactgcgctc
acaacggtggtcctggggtcgtcggttcaacgctcagccggaaaagccactgccaccctc
accagcaccccccagcctgggcacaccaaaccagggcagctcacaccacaggttctccag
tctcagcagcaggggaccgtggtgcgtccatcgcaggtaaccctgacgcaaacccccatg
gtgactctgaggccgccccacaatcggatcatgttgagtacgccacagcatgtgcagctg
aaacctcttcagacagtcaccgtattacctggaaacaaagggctcccccctggcttctca
caggcctccgctgcacagaggaagaaactcaacgaagctgcaggaggctccttccgtgac
gatgatgacattaacgatgtcgcatcaatggctggagtgaatctgtctgaagaaagcgcc
aggattctcgcgacgaactcggaactcgtgggcactctaacgaggtcttgtaaagacgaa
gcatttctctcgacagcgtcgttgcacagaagactattagaaataggcaaaaaatttgga
ataatagaactggggccagacgtagtcagcattgtgtcacacgcaacacagcaaaggtta
cagagcttaatagaaaaagtgacagagattgcgcagcaaaggaatatagtatacaaggaa
gacgagcgctatgaacagattagtgatgtgcggtcacagctgaagttcttcgagcagctc
gaccagatagagaaacagaggaaagaggagcaggaaagagagattttaatgaaagcagca
aagtcacggtcacgtcaagaagacccagaacagctccggttgaaacagaaggccaaagag
atgcagcagcaggagctggcacagataagacaaagagacgccaacctcacagccttagca
gcgataggaccgagaaaaaagaggaaagtgggttcacctggaccaggggctgcgacggag
ggctctggttcaagtgggtcgctttcaggcagcccttctgtcgccgcggcgaggcagttc
actcgacaacgaatcacacgggttaacctcagggacctcctgcactgtttggaaaacgag
agcgagacaagccattcacatctgctgtaccaagcattcctgaagtag
DBGET
integrated database retrieval system
