Polyodon spathula (Mississippi paddlefish): 121298403
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Entry
121298403 CDS
T07273
Name
(RefSeq) protein polybromo-1-like isoform X1
KO
K11757
protein polybromo-1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121298403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121298403
03036 Chromosome and associated proteins [BR:
pspa03036
]
121298403
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121298403
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
121298403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
CHDNT
Motif
Other DBs
NCBI-GeneID:
121298403
NCBI-ProteinID:
XP_041081445
LinkDB
All DBs
Position
23:complement(5379116..5393671)
Genome browser
AA seq
1678 aa
AA seq
DB search
MHRSKGVASVGSKRRRATSPSSSVSGGDFDEGQTSTSTPVSGRKRRRAPNIPTVDPVSGF
HSIVPPLQRDNEHSGQKKIAVCHELYNTIRDYKDDHGRLLCELFIRAPKRRNQPDYYEIV
TQPIDLMKVQQKLKMEEYDDVDQLTADFQLLFNNAKSYYKSDSPEYKAACRLWDLYLRTK
NEFVQRGEYEEDDEDGEDTQENPGTSTEEEALPSCLKEILEQLLEAVVTSAEPSGRLVSE
LFQKLPSKVHYPDYYAIIKEPIDLKTIAQRIQGGFYKSVNAMAKDIDLLVKNAKTYNEPG
SQVFKDANTIKKIFIQKKTEIEHAEPTKSSLRIRNRKSAQGDRLSAITMSLQYGSESDED
AFLAGAVRYDEGESEVESMSSCMEMSNPIFQLYEAVRGGRNSQGQLVAEPFLQLPSRKEY
PDYYQQIKQPISLQQIRNKMKNNEYENLDQVDADLNLMFENAKRYNVPNSAIYKRVMKLQ
QLLQAKKKELVRRDETEDGDSMLSSATSDTGSAKRKSIKKNAKKHRMKILYSSVTEAREP
GSGRRLCDLFMVKPSKKDYPDYYKIILEPVDLKTIEHNIRSDKYLSEEALIEDMKRMFRN
ARHYNEEGSQVYNDAIILEKLLKDKRKELGSLPEDDDMASPKLKISRKSGISPKKSKYLT
PLQQKLNELYEAVKNYTDKRGRRLSAIFLRLPSRAELPDYYVTIKKPVDMEKIKSHMMAN
KFQDVDSLVEDFVLMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEGGEEYHVPNVSL
LIQELVHNLFVSVLSHQDDEGRCYSDSLAEIPGRDPANPSQPPLNFEIIRRNIDNNRYRR
LDVFQEHMFEVLEKARRLNRTDSEIYEDALELQQFFIKIRDELCKNGEILLTPALSYTTK
HLHSDAEKEKKEKLPKEMEEDKLKREEEKKEAEKSDDHAGGAWQSGHQRTYSQDCSFKNS
MYHVGDYVYVEPAEPTLQPHIVCIERLWQDDTGEKWLYGCWFYRPNETFHLATRKFLEKE
VFKSDYYSKVPVSKILGKCVVMFVKEYFKLHPEGFRGEDVFVCESRYSAKTKSFKKIKMW
TMPLSSVKFVPRDVPLPVVRVASVFASASKHEAEKPSEMTDETKGVDSNGIIDKEKEDVP
VDMPNGEPGCIYYEQLHYNDMWMKVGDCVFIKSHGLVRRRVGRIEKMWVRDGAAYFFGPI
FIHPEETEHEPTKMFYKKEVFLSNLEETCPMNCVLGKCAVSSFKDYLSCRPTEVPEDDVL
LCESRYNESDKQMKKFKGLKRFSLSAKVIDDEIYYFRKPVVPQKEPSPLLEKKIQELEAK
FAEQGADDDMEIGEEEGEVIETPTLPQLQTPMASELDIMPYTPPQSTPKSIKGSSKKEGS
KRKINMSGYILFSSEMRAVIKSQNPDFSFGELSRLVGTEWRNLEATKKADYEDRAAKVAE
QQERERAAQQQQSGSPRAGTPVSALMGVVPPPTPMGMLNQNPVSGMMGGYGLPMQPLQGP
VDGMLSMGSMQPHYLGVSPLPHHLQPGMPGIPGMSYSGVNSMGGGPAGAYGQMGMHGQGP
TAPPPYPGQTGQPALQQPSTPMFVAPPPKTQRLLHSEAYLKYIEGLHSETGTVSKWDQTL
TAQRKDVHLTKEQESRLPAHWLKSKGAHTTMADALWRLRDLMLRDTLNIRHAYNIEQA
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgatccaaaggtgttgcttctgtgggttccaaaaggagaagggcaacatcccct
tctagtagtgtaagtgggggggactttgatgaaggacagacttcaacctcaaccccagtg
agtggcagaaagaggagaagagcacctaatatcccaactgtcgatccagtaagtggattt
cacagtattgtaccgcctttacaaagagacaatgagcacagcggacagaaaaagattgca
gtttgccatgaactgtataataccatcagagattacaaagatgaccacggaagacttctc
tgtgaactctttataagagctccaaaacgaaggaaccagccagactattatgaaattgtc
actcagcccattgacttgatgaaagtacaacaaaaattgaaaatggaggaatatgatgat
gttgatcagctgactgcagattttcaattgttgttcaacaatgcaaagagctactacaag
tcggacagcccggagtacaaagcagcctgcagactgtgggatctgtacctgagaacaaag
aacgagtttgttcagcgaggagagtatgaggaggatgacgaggatggggaggacacacag
gaaaaccctggaacgtctactgaggaggaggctctgccaagctgtttaaaagagattctg
gagcagcttcttgaagctgtggtcactagcgctgagccttctggacgtctggtcagcgag
ttgtttcagaaactgccctctaaagtgcattacccagactattatgcaatcattaaagag
ccaatagatcttaaaacaattgctcagaggatacagggtggtttttataaaagtgtgaat
gcaatggccaaggacattgatcttttagtaaaaaatgcaaaaacatataatgagccagga
tcccaggtctttaaggatgcaaacaccatcaagaaaatttttattcagaagaaaactgaa
attgagcatgcagagcccactaagtcaagtcttcgaatcagaaacaggaaatctgctcaa
ggggaccgcctgtcagctataaccatgtctttacagtatggctctgagagcgacgaggat
gcatttctagctggagctgtccgttatgatgaaggggagtccgaagtagagagcatgagt
tcctgcatggagatgtccaaccccatcttccagctctatgaggcagtccgaggtggtcgc
aacagccaaggacagctagtagcagagccctttctccagttaccttccaggaaggaatat
ccagattactaccaacaaatcaaacagccaatctcccttcagcaaataagaaacaagatg
aagaacaatgaatacgagaatctggatcaagtagatgcagatctgaatctcatgtttgaa
aatgccaagcgctacaatgttcctaactctgccatctacaagcgagtcatgaagctacag
cagctcctgcaggcaaagaaaaaggagcttgtgaggagagacgagactgaggacggagac
agcatgctgtcttcagccacatccgacacgggcagcgcaaagaggaagagcatcaagaaa
aatgcaaagaagcatcggatgaaaatcctgtacagttcagttacagaggcccgtgagcct
ggctccggcaggcggctgtgtgatcttttcatggtcaagccctccaagaaggactatccg
gattactataagatcatcctagagcctgtggacctaaaaacaattgagcacaacattcgc
tcagataaataccttagtgaggaggccttgatcgaggatatgaagcggatgttccggaat
gcacggcactataatgaggaaggctcccaggtatacaatgatgccatcattctggaaaaa
ttattgaaggacaagagaaaagaactgggatcattgcctgaagatgatgacatggcttcc
ccaaaactgaaaataagcagaaaaagtggtatttctcccaagaagtcaaaatacctgacc
cctttgcagcagaaactaaatgagttgtatgaagctgtgaagaactacacagacaagagg
ggtcgtcgcctgagcgccatcttcttgaggctgccgtcccgagcggagctccctgactac
tatgtgaccatcaaaaagccagttgacatggagaagatcaagagccacatgatggccaac
aagttccaagatgtagactcgttggtggaagactttgtgctgatgttcaacaacgcttgt
acctacaatgagccagaatctctgatttataaagatgctcttgtgcttcacaaggtcctg
ttggagactagaagggacctggaaggaggggaagaatatcatgtccccaatgtgtccctt
ttgatacaggagctggtccacaacctgtttgtgtctgtgctgagccaccaggatgatgaa
gggcgctgctacagtgactctctggcagagattccaggaagagaccctgctaaccccagc
cagccacccttaaactttgaaatcatcagaaggaacattgacaacaaccgttacaggagg
cttgatgtgttccaggaacatatgtttgaagttctggagaaagcaagaagactaaacaga
acggattcagaaatttatgaggatgccttagagctgcagcagttcttcattaaaatccgg
gatgaactgtgcaagaacggggagatcctgctgactccagcactcagctatacaaccaag
cacctccacagtgatgcagagaaggagaagaaggaaaaactaccaaaagagatggaagaa
gataaactgaagagggaagaagaaaagaaagaagctgagaagagcgatgatcatgctgga
ggtgcttggcagtctgggcatcagcgcacatacagccaggactgcagctttaagaacagc
atgtaccatgtaggagactatgtgtacgtggaaccagcagagccaaccctgcagcctcat
atagtctgcattgagaggctctggcaggacgatactggtgagaagtggttgtatggctgc
tggttttacagacctaatgaaacgttccacctggcaacacgcaaattcttggagaaagaa
gtatttaagagtgattactacagcaaagtccctgtcagcaaaatacttggaaagtgtgtt
gttatgtttgtaaaggaatactttaagcttcatcctgaggggtttaggggtgaggatgtg
tttgtttgcgagtcacgttattcagccaagaccaagtctttcaagaaaatcaaaatgtgg
accatgcccctaagttccgtgaagtttgtccctcgtgacgtgccgttgccagtggttcgg
gttgcttcagtgttcgccagtgcttctaaacatgaagcggaaaagccttctgaaatgaca
gacgaaaccaaaggcgtggattccaatggcatcattgataaggagaaagaagatgtaccc
gttgacatgcccaatggggagcctggctgtatatattatgaacagctccattacaatgac
atgtggatgaaggtcggagattgtgtctttattaagtcccatggcttagtacgtcgtaga
gtgggaaggattgagaagatgtgggttcgagacggtgctgcttacttctttggccctatc
tttatccacccagaggagactgagcatgagccaacgaaaatgttctacaagaaagaagtg
tttctgagtaaccttgaagaaacctgccctatgaactgtgtgctagggaagtgtgctgtg
tcctcgtttaaggactatctctcctgccggcccactgaagtgccggaagatgatgtactg
ctgtgtgagagtcgctacaatgaaagcgacaagcagatgaagaagtttaaaggcttgaaa
cgcttctccctctctgcaaaagtcatagatgatgaaatctattacttcagaaagccagtt
gtacctcagaaggagccttctccgctgctggagaagaagattcaagagctggaagcgaag
ttcgctgagcaaggagctgacgatgacatggagattggggaagaggagggagaggttatt
gaaactccaactctgcctcagctacaaactcctatggccagcgaactggacataatgcca
tatactccaccccagtccactccgaaatctattaaaggcagcagtaagaaggaaggctcc
aagaggaagatcaacatgagtggttacattctgttcagcagcgagatgagggcagttata
aaatcccagaacccggacttttctttcggcgagctcagtcgactggtggggactgagtgg
agaaatctggaagcaaccaagaaggcagactatgaagaccgggcagcaaaggtggcagag
cagcaagagagagagcgcgccgctcagcagcagcagtctggttctcctcgggcaggtacc
ccagtcagtgcattaatgggggtggtgcctcccccaacccccatgggaatgctaaatcaa
aatcctgtgtcaggcatgatgggtggctatgggctgcccatgcaacccttacaaggccca
gttgatggcatgctcagcatgggcagcatgcagccacactaccttggggtttctccttta
ccccatcatcttcagccaggtatgccaggcatcccaggcatgtcttattcgggtgtaaac
tccatggggggaggtccagcaggtgcatatggacagatgggcatgcatgggcagggcccg
actgctccacctccctacccaggtcagacaggacagccagcactgcagcagccgtccacg
ccaatgtttgtggcacctcctccaaagacacagcgcttactgcactcggaggcctatcta
aaatacatcgaggggcttcattctgagactggtactgttagcaaatgggaccagacactt
acagcacaaagaaaagacgtccatctgacgaaagagcaggagagccgcctgccagctcat
tggttaaagagtaagggggctcacacgaccatggccgatgcactgtggcgtctacgagac
ctgatgctgcgagatactttgaatatccgccatgcttacaacatagaacaggcttag
DBGET
integrated database retrieval system
