Polyodon spathula (Mississippi paddlefish): 121298412
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Entry
121298412 CDS
T07273
Symbol
xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
121298412 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121298412 (xpc)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
121298412 (xpc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
121298412
NCBI-ProteinID:
XP_041081472
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Position
23:12909749..12923753
Genome browser
AA seq
938 aa
AA seq
DB search
MAKRKGSIGACAVTETKKAKQATKGTTQRRPKTPGNKKLMEGACGDSPVSAMNSSTAARG
KKKKPDFKVPATADGAAKQKSIKHEQKEEPTEIKIEDHDNKDIMSTLKDRLAGRVKKESS
EEEEGSDEDEWEDVEELNEPVSFGSATSSLPEPVLPSQPVEIEIETPQQAKKRQRREKRK
AEFETYLRRMMNRFNKDVLVDTHKVHLLCLLANGFFRNRMCNEPDLQAIALSIIPEQFTK
VTPEHADVMFLSNLIKWFMSAFVLNPELSYNEDESRMSALERRFGMFAARDHEEMTHLFL
VILRALQLLCRLVLSLQPISLKGPPTKSKSRTSNCASQDSPGSSRKTKQAKKKCPVQKKG
SAKGVEETLSDPESDFAPEKGQRAKRAASGQGRSGKGAKKRKSSEEASSDGNNQDRAAKE
GAQRPKNARRRTVASKVCYKEESGNEDSSDSEFELSSDTDSDFSEEGGKHSTPKGKGQKS
GPQTKKPFKREKETGKPPKGKRDPQKTAEVLSDDDGDVKVVGEVSSRGTDQWLEVYLSRV
GKWVCVDCVRPTVNQPQQCCKSATKPIAYIVGIDDDGFVKDITRRYDPAWMTSTRKHRVD
AEWWEETVECYRSPVTEREKKEDLELHAQLLDQPMPTSISEYKNHPLYVLSRHLLKYEAL
YPPTAATLGYCRGEPVYSRDCVHTLHSRDTWLKEARVVRLGEVPYKMVKGFSNRSRKARL
LDTESRDKDDLPLFGSWQTEEYQPPVAVDGKVPRNEYGNVYLFKPCMLPIGCVRMQVSNL
HKVARKLGIDCAPAVTGFDFHCGFSHPVIEGYVVCEEYKEVLLAAWENEQAEMERKEKEK
REKRVLANWKLLVKGLLIKERLKQRYGNQSEANVPTGTAEGGGFSSDEEGPSSQSTVPDL
ACSWPRNRQAPEEEGRIVRKSKREKRGEQKNLFPFEKK
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagagaaaagggtcgataggtgcctgtgcagtaacagaaactaagaaagcaaag
caagcgacaaaggggacgacacagaggagaccgaaaacacctggcaataaaaaactaatg
gaaggtgcctgtggtgacagtccagtctctgcaatgaattcttctacggctgcaagagga
aagaaaaagaagccagacttcaaagttccagcaacagcagatggggctgcaaaacagaag
agcatcaagcatgaacagaaggaggagccaactgaaattaaaatagaggaccatgacaac
aaggacattatgagcaccttgaaggacaggctggccggcagggtgaagaaggagagctca
gaggaggaggagggcagtgatgaggacgagtgggaggatgtggaagaactcaatgaaccg
gtatcgttcgggtcagccacctccagccttcctgagcctgtcctccccagtcagccagtc
gagatagaaattgaaacaccacagcaagccaagaagagacagaggagggagaagaggaaa
gctgaatttgagacctacctacgaaggatgatgaaccgtttcaacaaggatgtgcttgta
gacacccataaggtgcacctgctctgcttgttagccaacggtttctttcggaacaggatg
tgcaatgaaccagatctccaagctatagccctgtctataataccagagcagttcaccaaa
gttaccccagagcacgcagatgtcatgttcctctcaaatctcatcaagtggtttatgtca
gcctttgtcctgaacccagagttatcgtataacgaggacgagagccggatgtcagctctg
gagaggaggtttgggatgttcgctgccagagaccatgaagaaatgacacaccttttctta
gtaattctcagggctttacaattactttgccgtctggtgctgtctcttcaacccatttct
ctgaaaggaccccccactaagagcaagtcaagaacttccaactgtgcttctcaggacagt
cctggttcttcccggaagaccaagcaagccaaaaaaaaatgtccagttcagaagaaaggc
agtgcgaagggggttgaggaaaccttatctgatccggaaagtgattttgccccggaaaag
ggccaaagagccaagagagcagccagtgggcagggcaggtctggcaagggggcaaagaaa
cgcaagtcttcagaggaggcgagcagtgatggcaacaaccaagacagagcagcgaaggaa
ggagcgcagagacccaagaatgcccggcgcaggacagtggcctccaaagtctgttacaaa
gaggagagtgggaatgaagacagcagtgactcagagtttgagctttcttctgacacagat
agcgatttctcagaagaaggaggaaaacacagcacacctaagggcaaagggcagaagtct
gggcctcaaacaaaaaagccttttaagagagaaaaagagactggcaaaccaccaaagggc
aagagagacccgcaaaagacagctgaggtgctaagtgatgatgacggagacgtgaaagta
gttggcgaggtgtcttccaggggtacggaccagtggctggaggtctacctcagtcgagta
ggaaaatgggtttgcgtggattgcgtgcgacctacggtaaaccagccgcaacagtgctgt
aaatctgccaccaaaccgattgcctacattgtgggcattgatgacgatggcttcgtcaag
gatattacaaggcgctacgatccggcgtggatgacgtccaccaggaaacacagagtagat
gctgagtggtgggaggagacagtggagtgctatcggagtcctgtcactgagagggagaag
aaggaagacctggagcttcatgcccaactcctagaccagccaatgccaacttccatttct
gagtacaagaaccacccactgtatgtgctgagtaggcatctcctgaaatacgaagccctc
tacccaccaactgccgccaccctgggctactgcagaggagagcctgtctattccagggac
tgtgtgcacactctgcattctcgggacacgtggctgaaagaggccagggtagtgagactg
ggagaggtgccatacaagatggtgaaagggttttcgaatcgttcccgcaaggcccgtctg
ctggatacggagagccgtgataaagacgacctgccgctattcggatcctggcagacagag
gagtaccagccccccgtggcagtggatgggaaggttccccggaacgagtatgggaatgtg
tatctcttcaagccctgcatgttgcccatcggctgtgttcgaatgcaagtctccaacctc
cacaaagtggctcgcaagctgggtattgactgtgccccggcggtgactggctttgatttc
cactgtggattctcacaccctgttattgaaggctatgtagtgtgtgaggagtacaaagag
gttctactggccgcatgggagaatgagcaagcagagatggagaggaaagaaaaagagaaa
cgtgagaagcgagtcctagcaaactggaagctgctggtaaagggattgctgataaaagaa
cggttgaagcagcgatatggaaatcagagtgaagccaacgtccccacaggcacggcagaa
gggggagggttctcctctgacgaggagggtcccagctctcagtccactgtccctgacctg
gcctgttcctggccccggaacagacaggccccagaagaagagggaagaattgtgagaaaa
agcaaacgtgagaagaggggtgaacaaaagaatctgtttccttttgagaagaaataa
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