Polyodon spathula (Mississippi paddlefish): 121298587
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Entry
121298587 CDS
T07273
Symbol
cicb
Name
(RefSeq) protein capicua homolog
KO
K20225
capicua transcriptional repressor
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121298587 (cicb)
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121298587 (cicb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_Cic_C
HMG_box
DUF4819
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
121298587
NCBI-ProteinID:
XP_041081649
LinkDB
All DBs
Position
24:complement(19419076..19452700)
Genome browser
AA seq
3100 aa
AA seq
DB search
MPLKKQGGRSPPSTRTKAGKKRGPSAQQNTPGAQGAQESTGGGRDAEREREKQPSSTGAQ
RRPQASPADAHYSQSRTSNSRVQSQDTAASPSKGSHQHHPLPQHRPPPPQGSKLREGKGA
RARESQRPQSTVGLGPGEADCGTGEPSSSNASSSSSTSTNPPSSRKTATFKSRAPKKKYT
LEHYRSSLGEGGGGGGEGEVAGGAGNTEAISGDTMESVGASPVSSSSSSSGVASDGSRED
SNGSEALSSNLASSGGQTGLGEALAAQPESGRGDDAGKTADQSNPDGEPDSINDDDDNKN
NNNNKHDEDDNSDNYNDDANNQEGKCGLLSVRSSSTDTASEHSADSELEEANANRNPPAP
SSSTAARLPPHPPLPVMHTPSPQPLPLAPSEQQWEFRLGLPSHRLLAWRREGPQRGVETQ
GSLLQGLGVQFHGERSLTFYEGPPLPLPPVLDEALPHDAVVAVGTRVCARDGRDESRYRE
GVVTETSPGPPQSYRVRFDRASNNNPNNNDNNRNNDNNNNDDNDASRSNSDPGASGQEKD
WAWVARSSLRLLQAPCGGNKESPSSSSSVTSAAAVILVGPGGGVRGGGGVVVEGGSSERI
RGDPPPPPSPPLRLSSASETQTPEEMEMEVEKEICTISAGRGVISVNTNNSSSSSNNNNS
TSVSAGSSEMAIGDDSSSSSSPRFKPQQLSSLHPSLSLQPTAAQNQSLLLLSARETQNKN
LHQNQQQQHPLIQNHTPPEDMEVSKISLNMASPLRAESVALLLDRGGGGVGEEDGGAERP
GSRGPPASLQQHGSQRQILSPSKSAGYPPMTGVRGGGGGVLPLVLTGGSSNRCLLLPEQP
SPLLLSQEVMSSSAGSGRSSANSSSQGGGSGCTTPGGSGSSSRSRTPLTAAQQKYKKGDV
VCTPNGIRKKFNGKQWRRLCSREGCMKESQRRGYCSRHLSMRTKEMESGGAGSSGRLSSD
PLSRTGRASSEFDWEDTSRDSSSETSGSRADSRPRLTLPLLPSSSSQDLSRFDFDECEAA
NMLVSLGSSRSGTPSFSPISNQSPFSPAPSPSRSPLFGFRPANFSPITASPVIQRVTGGA
RHRHMSASTPKSEGAPGLHHHSSAPPGTGHRDRERHSSGILPTFHANLTFTVPMSPNKRK
LETVGNAPCSSHSHPASSSAAGLGICLPAPPEFQKSDSTDSGVESVSHTPTLPSTPAGFR
AMSPASAAAAATGGGQASSSSSSSPLPLLLSPPPSALTSDPSPTVRRVPALTQQQQQQQQ
QQQSQRDSPVIVRNPDVPLLPAKFAEKPPESRAGPRTARPTVAGAGSIVGPSFAPSSSSS
SSSSVCPSVKSSGLQMPVPINASHLAAQNQATNGCIIVGRVSSSSSSSCSVSQAGPSSSS
SCSALNSGFTLGIPLQQPVPFHPTPTALLPVIVPSELSHPAPRKEIIMGRPGTVWTNVEP
RSVPVFHWHSLVPFLAPSQSESSIQSSEGQQVVSHPPPPNQNKDPPQSCVVPVPEPSTTT
APSLEGDPEKRPPPSPSPSEAPPREEQTPPGRDRGAAGGDSETESDADDPFFSSMMPEMP
LSVPPVKRRTQSLSALPKDRDCDKDGRSPGKREKDHIRRPMNAFMIFSKRHRALVHQRHP
NQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSDVKT
ALSGAGGVPKEIRERSMSETGEPLAVSQAAVLGAELKVGPSGVGVTERQAGEGPQTQLTR
PRAFSHSGVHSMERGERNTQALTELTQICVSGSQYSGMKFSAPRRSFSRSQRAASEEMTS
DEERMVICEEEGDDDVIEDSYPAGTIDLKCKERVTDSESDGEEGEHKRVFAPVIRSSPHS
HSLAHPFSHPHSHSKPENNANNSKQPLSVRREIMSSQQQQQQHRNQNLPQPPSPSSQQHK
HHSAPSNSSQSPSQSHRTSFNTSYQSGTGGACKSTGGPPTSPSSTATGKRPSSSSNTNNN
YNNNDNNTNSNSSSSSGDGLKRKRGDQQQQQQQQQQLRETSSAEPSYPPAHTPNSLTASP
SPSPSSQPQPQSVIASTVSMLPALVFPQSPGGVGVGRVYSPSPLPALPLSQQHCLSVRMA
STVVTSVVKPVSSTPVPIASKPATLPCPPAELQLSGRVFNQQGVPGGGAVSVLYAEKRPP
AVLGAAQPTQQIVIAPPSAGLLPRYTSSTPPFSFATTSSPSSSCSSPHAAFSMAGGGGVL
TSLVVGGGGAIGIGGPQHGFGGPPQGTAVHLIAPHQQPQSYHSSGCAVNNGTGLAAGKGS
SLGLIQSPAQFLSAAAPSCGPKGVTQVQYILPTLSPGAVAMGGAGKAGLPYPSQQLPPTH
HPQQQQQQQQQQPASIQFTLPAPQQGPSQVANGKAVGVVTGATPPQQQNLAACNSPGSRA
QSISPVLHQPCLSGSILQAQGKMLVPMATVRTAQPHPLPLVAPPISVPIQNGAQPASKII
QIAQVPVVQSQVAPAGAIHAGSPFPASMTTATVMSPGSSQPQKVLLPSAPTRIAYVQSTI
SSSSQPDPTAGPAYVSSSQGTLGLTAAIAPSGQTVVQPVLAGQTPVLTPGQSPSCPQVPP
PPHGPSVAGQVLTAIYPSPGAGGAGGVVPMVTLPQNMVYRVSSPAPHSQPQILPKVAQTH
KPANCTAPLGTSSGSAVSLQQAGLTGGLSSAPRPPQRVKATLASIPVGSLESEVGGSSRG
GSATVASPPDSGGEPQNQDRYPPKLHKEWDPAGEREERGNSTGPEGQIAAAGSSAGAMSG
TCRGKEGVTQQQGVWRGPVPEAAPPSSPCPSSSSSSSSSGSVSAVGGAETPKLPSLSDPP
PAKKVKVRPPPLKKTFDSVDKVLSDVYFEERFAELPEFKPEEVLPSPTLQSLATSPRAIL
GSYRKKRKNSTDLDSSTEDPVSPKRKMRRRSSCSSEPSTPKSAAKCEGDIFTFDRPGTDS
EDVLGELEFDKVPYSSLRRTLDQRRALVMQLFQEHGFFPSAQATAAFQTRYSDIFPTKVC
LQLKIREVRQKIMQTANPSELVSLGAGLGSQDMSAPSTPNPNPGPSQTQIQGPAESHATQ
EAGETQGGEGEGEGGEGETGCTSPQKPQGAAMASSSQELR
NT seq
9303 nt
NT seq
+upstream
nt +downstream
nt
atgccgttgaaaaagcaaggggggcgctcgcccccctccaccaggaccaaagcagggaag
aaacgtggcccttcagcccagcagaacacccccggtgcccagggggcccaggagtctaca
ggaggggggagggatgcagagagggagcgagagaagcagccgtcttcaacaggggctcag
cgcagaccacaagcgagcccagcggacgcccattattcacagagcaggacttctaacagc
agagtgcagagccaggacacagcggcctctcccagcaaagggagccaccaacaccatccg
ctcccccagcaccgccctccccctccacagggctccaagctcagagagggcaaaggggca
agggccagggagagccagcgcccgcagagcacagtaggactggggccgggagaggcggat
tgtggaacaggagagccctcctctagcaacgccagcagcagcagcagcaccagcaccaac
cctccctccagccggaaaaccgccaccttcaaatcccgcgccccgaaaaagaagtacact
ttggagcattataggagtagtttaggagaaggaggaggaggaggaggagaaggagaagta
gcagggggtgctgggaatacagaggccatttcgggggacaccatggagagtgtgggagcc
tctccagtcagcagcagcagcagcagtagtggggttgcttctgatggcagccgggaagac
agcaacggcagtgaggccctgagttcgaatctcgccagctcaggggggcagactgggctg
ggggaagccttggcagcccagccggaatcaggaagaggagatgacgctgggaagacagca
gatcagagcaaccccgatggagaacccgacagcatcaacgatgacgacgacaataaaaat
aacaacaataataaacatgatgaagacgacaacagtgataactacaacgacgacgcaaac
aaccaggagggtaagtgcggtctgctgtccgtacgctcctcttccacggacaccgccagc
gagcactctgccgactctgagctggaggaagccaacgccaaccgtaacccacctgcccca
agcagctccaccgcagccaggctccccccgcacccgcccctgcctgtcatgcacacaccc
tccccccagcccctgcctctcgcaccctcggagcagcagtgggagtttcgactagggctc
ccgtcccatcggctgctggcttggaggagggagggtccccagcgtggtgtggagacgcag
gggagcctcttgcagggtctgggggtgcagttccacggggagcgctccctgaccttctac
gagggcccccccctgccgctgcctcccgttctggatgaggccctgccccacgatgccgtt
gtcgctgtgggaaccagggtgtgcgcccgtgatggccgggacgagagccgctacagggag
ggggtcgtcacggaaacgagccctgggcccccccagtcctacagggtgcggtttgacaga
gcttccaataataatcctaacaataatgataataacaggaacaatgataataataataat
gatgacaatgacgccagcaggagtaacagcgacccaggtgcgtccggtcaagagaaggac
tgggcttgggttgcccgctcaagcctaaggctgctgcaagctccctgtgggggtaacaag
gaaagcccctcctcttcctcatcagttacttcggcagcagcagtaatactcgtaggtcca
ggagggggagtaagaggagggggtggtgtcgtagtcgaggggggcagcagcgagagaatc
aggggggaccctcctcctcctccctctcctcctcttcgtctctcttccgccagtgaaaca
caaactccggaagagatggagatggaggtggaaaaggagatctgcactatcagtgccggc
cgcggggttataagcgtcaacaccaataacagcagcagcagcagcaataataataacagt
actagcgtttctgccggcagcagcgagatggccattggagacgacagcagcagcagtagc
agccctcgcttcaaaccacagcagctcagctctctgcacccctctctgtctctccagccc
actgcagcacagaaccagtccctcctgctgctctccgcaagggagacccaaaacaagaac
ctgcaccagaaccaacagcagcagcatcctctaatccagaaccacacccctcctgaagac
atggaggtgtccaagatcagcctgaacatggcctcccctttaagggcagaaagtgtggct
ttgcttttggacagaggaggtggaggtgtgggagaggaggatgggggggcggagcggcca
ggctcccggggaccccctgcctccctgcagcagcacggctcccagagacagattctttcc
ccctccaagtctgcagggtaccccccgatgacaggggttcggggagggggagggggagtg
ttgcctttggtgctgacaggtggctcctccaatcgatgcctcctcctccctgaacagccc
tcccccctcctgctgagccaggaagtgatgtcgtcgtcggcaggaagcgggaggagcagt
gccaacagcagcagccagggaggagggagcggctgcaccacgccgggggggagcgggtct
tcctctcgctctcgcacccctctgactgcggcccagcagaaatacaaaaaaggggacgtg
gtctgcaccccgaacggcatccgcaagaagttcaacgggaagcagtggcgccggctgtgc
tcccgcgagggctgcatgaaggagtcccagcgcagggggtactgctcccggcacctctcc
atgagaaccaaggagatggagagcgggggagcgggcagcagcggccggctctcctcagac
cccctctccaggacggggagagccagcagcgagttcgactgggaggacacgtcccgggac
agcagcagcgagaccagtggcagccgggctgactcaaggcccagactgaccctgcccctc
ctcccctcctcctcctcacaggacctctcccgctttgacttcgacgagtgcgaggcggcc
aacatgctggtctccctgggcagctcgcgctccggcaccccctccttctcccccatctcc
aaccagtcccccttctccccggcaccctccccctcgcgctccccgctcttcggcttccgg
ccggccaacttcagccccatcacggcctcccccgtgattcagagggtgacggggggggcc
aggcacaggcacatgagcgccagcacccccaaatcagagggggccccgggattgcaccac
cacagcagtgcccccccagggacggggcaccgggacagagagaggcattcctcggggatc
ctgcccactttccatgccaacctgaccttcactgtccccatgagccccaataaacgcaaa
ctggaaactgtgggcaatgccccttgctcctcccactcccaccccgcttcctcctctgca
gcaggattgggaatctgcctcccggcccctccggaattccagaagagcgacagcacggac
tctggcgtggagtctgtctcccacaccccgactctgccctccacgccagctgggttcagg
gccatgtctccagcatcggcggcggcagcagcgactgggggagggcaagcctcctcctcc
tcttcttcctcccccctgcccctgctcctctctcctcccccctcggccctcacctccgac
ccctcccccacggtgcgcagggtcccagccctgacccagcagcagcagcagcagcagcag
cagcagcagtcccagagagactccccagttatcgtccgcaaccccgacgtgcctttactg
ccagccaaattcgcagagaagcccccggaaagcagggccggcccccggacagccaggccg
acggtggcaggagctgggagcattgtaggaccttcttttgctccttcttcatcgtcttca
tcgtcttcctctgtgtgcccatcggttaaaagctctggcctccagatgccggtccccatt
aacgcctcccacttagcagcgcagaaccaggcaaccaacgggtgcattatagtgggcaga
gtctcctcttcctcatcctcatcctgctctgtcagccaggcaggcccctcctcctcctcc
tcctgctctgctctgaattcggggttcaccctggggatccctctgcagcagcctgtgcct
ttccaccccacccccactgcactgctgcccgtcatcgtgccgtccgagctctcgcacccg
gcgccgaggaaggagatcatcatgggccgccccgggacagtttggaccaatgtcgagccg
cgatcggtcccggtatttcattggcactcattggtccccttcctggctcccagccaatcg
gaatcctccatccagtcctcagaggggcagcaggttgtcagtcatcctcccccacccaat
cagaataaagatcctccccaatcctgtgtggtgccagtcccagaacccagcactaccaca
gctcccagtctggaaggggaccctgagaagcgcccccctcccagtccaagccccagtgag
gccccgcctcgagaggagcagaccccccctggcagagacaggggggcagcagggggggac
agtgagactgagagcgatgcagacgacccgttcttctccagcatgatgcccgagatgccc
ttgtctgtacccccggtgaagaggaggacccagtccctcagcgccctgcccaaggacagg
gactgtgacaaggatggcaggagcccgggcaagagggagaaggatcacatccggcggccg
atgaacgccttcatgatcttcagcaagcggcatcgtgccctggtgcaccaacgccacccc
aaccaggacaaccgcaccgtcagcaagatcctgggggagtggtggtacgcactggggccc
aaggagaagcagaaataccatgacctcgccttccaggtaaaggaggctcacttcaaggca
caccctgactggaagtggtgcaacaaggaccgcaagaaatcaagctctgatgtgaagaca
gcactgagtggagctgggggtgtgcccaaagagataagagagaggagcatgtcagagact
ggagagcccctggctgtttcccaggctgccgtcttgggggcggagctgaaggtaggtccc
agtggagtgggtgtgaccgagcggcaggcaggggaggggcctcagacccagctgacacgc
ccccgagccttctcacacagtggagtgcacagcatggagagaggagagaggaacacgcag
gcactgacagagctgacacagatatgtgtctctggctctcagtactctggtatgaagttc
tctgccccacggcgctcgttctcgcgctcccagcgcgccgccagcgaggagatgaccagc
gacgaggagaggatggtgatctgtgaggaggagggggacgatgatgtcatcgaggactcc
tacccggccggcaccatcgatctcaagtgtaaagagagagtgacggacagcgagagcgac
ggggaagagggggagcacaagagagtgtttgccccggtgatccgctcctcccctcattct
cactcccttgctcaccccttctcacacccccactctcactccaagcccgaaaacaacgcc
aacaacagcaaacagccactttctgtgcgcagagaaattatgtcctcccagcaacaacag
cagcagcataggaatcagaacctcccacagcctcccagtcccagctcccagcaacacaag
caccacagcgctcccagcaacagctcccagtcaccctcccagtcccaccgcacctccttt
aacaccagttaccagtctggaacggggggagcatgtaaatcaacaggagggccacccact
tcaccatcatcgacagcaacaggcaagcgcccgagcagcagcagcaataccaacaacaac
tataataacaatgataataataccaacagtaatagtagcagcagcagtggcgatgggctc
aagaggaagcgaggggatcagcagcagcagcagcagcagcagcagcagctcagggagacg
tcctcggcagagccctcctacccccccgctcacacacccaacagcttgacagcttccccc
tcccccagcccttcatcccagccccagccccagtcagtcattgccagcacagtgagcatg
ctgcccgcactggttttcccccagtcccctggaggggtaggggtggggcgtgtttactcc
ccaagccctctccccgccctgccgctctcccagcagcactgcctttctgtcaggatggcc
tccacggtggtgaccagcgttgtgaagcccgtgagcagcacccccgtccccatcgccagc
aagccggccaccctgccctgccccccggccgagctgcagttgtcggggagggtcttcaac
cagcagggggtgccgggcggaggggctgtgtctgtcctgtacgcagagaagagaccgcca
gcggtgctgggggccgcgcagcccacacagcagattgtgatcgcccccccctctgcgggg
ctactgcccaggtacacctcgtcgacccctcccttctccttcgctaccacctcctctcct
tcgtcatcctgctcttctcctcatgctgcattctccatggctgggggagggggcgtgctg
accagcctggtggtgggtggggggggtgcgattgggattgggggcccccagcatggtttc
gggggacccccccagggcacagctgtgcatctcatcgctccccatcagcagcctcagagt
taccacagctccggctgcgctgttaataacggcacggggctggccgctgggaaaggcagc
agtctgggcctcatccagtccccagctcagtttttgtctgcggctgcgccctcctgtggc
cctaaaggggtaacgcaggtgcagtacatcctgcccaccctgtccccaggggcggttgct
atgggaggggccggaaaggctggcttaccctacccctcccagcagctccctcccacccac
cacccccagcagcagcagcagcagcagcagcagcagccagccagcatccagttcaccctg
ccggccccgcaacaggggcccagccaggtggccaatgggaaggcggttggcgtggtgacg
ggagccacgcccccacagcagcagaatcttgcagcctgcaactcgccagggagcagagct
cagtccatctccccagttctgcaccagccctgtctctctggctcgatactccaggcccag
ggcaagatgctggttcctatggcgactgtgcgcaccgcccagcctcatcccctccccctc
gtggccccgcccatctctgtgccgatccagaatggggcccagccagccagcaagatcatt
cagatcgctcaggtgccagttgtccaatcgcaggtggcccccgcaggagcaatacatgct
gggagccccttccccgcctccatgacgactgccacagtgatgtcaccaggctcctcccag
ccccagaaggttctcctgccctctgctcccacacggatcgcctatgtgcagtcgacgata
agctcctcctcccagcctgaccccaccgctggccctgcctatgtctcctcctcccaggga
actctgggcctcactgctgccatcgccccctctggtcagactgtggtacagcctgtcctt
gcaggtcagacccctgtccttaccccaggccagtctcccagctgcccccaggtgcccccc
cctcctcacggtcccagtgtggcggggcaggtgctgacggccatctacccctctcctggt
gctgggggtgcagggggtgtggttccaatggtgacgctgccgcagaacatggtctacagg
gtgtcctcccctgcgccgcactcgcagccacagatcctgccgaaagttgcgcagacgcac
aagccagccaactgcaccgcccctctggggacctctagtggctctgcagtgtcgctacag
caagcaggactgacagggggcttgtcctcggcccctaggcccccccagagagtgaaagcc
acgctggcctccatcccggtgggcagtctggagagcgaagtgggggggtcatctcgaggg
gggagcgccactgttgctagcccccctgacagcggaggggagccacaaaaccaggacagg
tacccccccaaactgcacaaggagtgggaccctgccggggagagagaggagcggggcaac
agcaccggccccgaggggcagatagcggctgctgggagctctgcaggggcaatgagcgga
acctgccggggcaaagagggggtgacacagcagcagggtgtatggagaggccctgttcct
gaggcagccccgccctcctctccctgcccctcctcctcctcctcctcttcttcttctggc
tctgtctccgcagtggggggggcagagacccccaagctgccctccctgagtgacccccct
cccgccaagaaggtgaaagtgaggccgccgcccctcaagaagacattcgactctgtggac
aaggtcctgtcggacgtgtatttcgaggagcgattcgctgaactccccgagttcaagcca
gaggaggtgctcccctcccccaccctgcagtctctcgccacctctcctcgagccatcctg
ggcagctaccgcaagaaacgcaagaactccaccgatctagactcttccacagaggatccc
gtctctcccaagcggaagatgcggcgcaggtccagctgcagctcggagccgagcaccccc
aagagcgcagccaagtgtgagggagacatcttcaccttcgaccggccaggcacggactct
gaggatgtcctgggggagctggagtttgacaaggtgccgtactcctccctgcgtcgaacc
ctggaccagcgcagagccctagtcatgcagctcttccaggagcatggcttcttcccttca
gcccaggccacagctgccttccagactcgttactccgatatcttccctacgaaggtgtgt
ctgcagttgaagatcagggaggtgcggcagaagatcatgcagaccgccaacccttcggag
ctggtgagcctgggagcagggctggggtcccaggacatgagcgcacccagcacccccaac
cccaaccctggccccagccaaacacagatacaggggcccgcggagagtcacgccacacag
gaggcaggggagacccaggggggagagggggaaggagagggaggggaaggggagacaggc
tgcacttccccacagaaaccacagggggcagcgatggcatcatcctcccaggagttgaga
tga
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