Polyodon spathula (Mississippi paddlefish): 121298613
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Entry
121298613 CDS
T07273
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121298613 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121298613 (skiv2l)
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121298613 (skiv2l)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121298613 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
121298613 (skiv2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
DUF2695
DUF3516
Motif
Other DBs
NCBI-GeneID:
121298613
NCBI-ProteinID:
XP_041081672
LinkDB
All DBs
Position
24:complement(22109354..22136147)
Genome browser
AA seq
1258 aa
AA seq
DB search
MESETDRMVLPPMDRYDLPLSLLQVGCSGSFELISQEQTNCLVPHSTLPQGLPPFALDLI
SEVERRFLGDPEWLPIHNFENAFQKFNKVFSRSQCFDSLLHVEPSPVHSTLKVVRNPTTG
ELLDFQEELLEDTGLSSKNSLSLQRPPGPPSQGVRGSTTNYPFWPGGMDEPNLDQIKKKG
QLEEDIDFDKDLLSVPPGFKKGMDFRKKDTGAPPSSLSLLSLLSTLDDIIDLGQEEEEAG
KGKGGGKEELSTGKTLPRSNSLEEFGLQSSVAPPESVLPIRVPPSPEAGERERERWAVPV
DINSPCTDFYKRIPEPAFKWPFELDVFQKQAILHLENHDSVFVAAHTSAGKTVVAEYAIA
LSQKHMTRTIYTSPIKALSNQKFRDFKTTFQDVGLLTGDVQLNPEASCLIMTTEILRSML
YNGSDVIRDLEWVVFDEVHYINDAERGVVWEEVLIMLPDHVRIILLSATVPNTLEFADWI
GRIKQKQIFVISTVKRPVPLEHFLYTGNSNKTQNELFLLLDANANFLTKGYYAAVEAKKE
RTSKHAQSFGARPGAHSSTSSQDRSIWLSLLHSLAKKDQLPVVCFTFSRSRCDENARGLA
TLDLTSSAEKSETHVFFQKCITRLKGSDRQLPQVLQMSDLLKRGVGVHHSGILPILKEVV
EMLFTRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTAFRDLLPGERQLPRHTDTVC
VTWGARATNRTRSPRTCSTRDLHKMMLGKPTLLQSQFRLTYTMILNLLRVEALRVEDMMK
RSFSEFHTRKHTKVHEQGISSLTQSLSSLPEVESVGQLSDLVNYYAAVQELTRTRAALQK
RVMESVNGMKALSAGRVVLVTNSVHSNALGLILQVSSDATSRTFTTLVLCERQKEGERPE
AQRGAKTPTPEDLLSTRVFLPDGPCSHTVEKLKAEDISSITVKTLRINAERIIDDYNKRQ
MPRFKLDPPGQAVTKATQELLRLAESNPGGITPLDPVNDLQLKDLDVVEGSMRVRQLQET
LQTFTCAHSPKFTQQYARLQQRMVIQDELERLQYLISDQSLSLLPQYQQRINVLKTLKYV
DDSCTVQLKGRVACEISNHELMVTELVFENVLSDLPPEEIAALLSCLVFQQKTQVTPEIS
TSLQQGVQRIVSVAERIATLQRDCGMNESVEDFVAQFKFGLLEVVHCWARGLPFSEIAQL
TDVQEGIVVRCIQRLDETCRDVRNAARIIGDPVLYAKMEQASMMIKRDIVFAASLYTQ
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggagagcgaaacagacagaatggttttgcctccaatggaccggtacgatctaccccta
tcgctgctgcaggtgggctgttccggtagctttgagctcatctctcaagaacaaaccaac
tgcctggtcccccacagcactctgccccagggtttgccgccctttgccctggatctgatc
tcggaggtcgagaggcgcttcctgggcgatccagaatggcttcccatccacaactttgag
aatgcctttcaaaaattcaataaggttttcagtcgttcacagtgttttgactccctactt
cacgtggagcccagccccgtacactccactctgaaagtggtgaggaacccgacgactggg
gagctgctggactttcaagaggagctgcttgaagacaccggcctttcttccaaaaactcg
ctgtccctccagcggccccccggccccccttctcagggggtgagaggcagcaccaccaac
taccccttctggccagggggaatggatgaaccaaatttggaccaaattaaaaagaaagga
cagcttgaagaagatattgactttgataaagatcttctctccgttcctccaggattcaaa
aagggaatggattttaggaagaaagacaccggtgcacctccctcctctctcagcctcctc
tctctgctgtccacgcttgatgacatcatcgacctgggacaggaggaggaagaggccggg
aaggggaaaggaggagggaaggaggaactgtctacaggcaagactctgcccagatcaaat
agtctggaagaattcggtctgcagagctctgttgcccccccagagtctgtcctgcccatc
cgtgtccccccatctcctgaggcaggtgagagggagcgagagcgctgggcagtgccagtg
gatatcaactccccctgcacagacttctacaagagaataccagagccagcattcaagtgg
cccttcgagctggatgtattccagaagcaggcgatcctacacttggagaatcatgactct
gtgtttgtcgccgcacacacgtctgctgggaagaccgtggttgcagagtacgccattgcg
ctgtcacagaaacacatgaccaggacgatctacacctcgcccatcaaggccctgtccaat
cagaagttcagagacttcaagaccaccttccaggatgtgggtctgctaactggagatgtg
caactgaacccagaagcctcctgtcttattatgaccactgagatactgaggtccatgctg
tacaatggctctgatgttatcagagatttggagtgggtggtatttgatgaggtgcactac
atcaatgatgcagagagaggggtggtgtgggaggaggtgctgatcatgctgcctgatcat
gtgcgcatcatcctgctgagcgccaccgtgccaaacactctagagtttgcagactggatc
gggcgtatcaaacagaagcagatctttgtgatcagcactgtgaagcggcctgtccctctg
gaacacttcctgtacacagggaacagcaacaagactcagaacgagctcttcctgctgctc
gatgccaatgccaacttcctcaccaagggatactatgctgcagtcgaagccaagaaggag
cgaaccagcaaacatgcccagtcatttggtgccagacctggagcacacagctctactagc
agccaggatcgttcaatctggctctccctgctccactctctcgctaagaaggaccagctg
cccgtggtttgcttcacgttctcccgttcccgctgcgatgagaacgcccgcggcctggcc
actcttgacctcaccagcagtgctgagaagagtgagacccacgtgttctttcagaagtgc
atcacacgactgaagggctctgaccgacagctaccacaggttctccagatgagtgatctg
ttgaagaggggtgtgggagtgcatcacagcgggatcctgcccattctcaaagaggttgtg
gagatgctgttcactcgcgggctggtgaaggtcctgtttgctacagagacgtttgccatg
ggggtgaacatgcctgccaggaccgtggtgttcgacagcatccgaaaacacgacgggacg
gccttcagagacctgctgcctggtgagagacagctaccgagacacacagacactgtctgt
gttacctggggtgcccgtgccactaataggacacgttccccccgcacgtgctctacccgt
gacctgcacaagatgatgctgggtaagcccactctactccagtctcagttcaggctgacc
tacaccatgatactgaacctgctgcgagtggaggctctgcgggtggaggacatgatgaaa
cgcagcttctccgagttccacacgcgcaagcataccaaggttcatgagcagggcatctcc
tccctgacccagtctctgtccagtctgccggaggtggagagtgtgggtcagctgagtgac
ctggtcaattactacgctgctgtccaggagctcacccgcaccagggcagcactgcagaag
cgtgtgatggagtcggtgaatggaatgaaggctctgtcagcaggcagggtcgtgctggtc
actaactctgtacacagcaatgcgctgggactcattctccaggtatcctcagatgcgacg
agcaggacgttcaccaccctggttctgtgcgagagacagaaagaaggggagaggccagag
gcacagagaggggccaagaccccaaccccagaggatcttctgtcaacgagggtctttcta
cctgacggaccctgcagccacacagtggagaagctgaaagcagaagacatctctagcatc
actgtgaagaccctgcggatcaatgcagagcgcatcatcgatgactacaacaagaggcag
atgcccaggttcaagctggaccccccaggacaggctgttaccaaggcaacacaggagctg
ctgcgattggccgagtcgaaccccggtgggatcacgcccctcgaccctgtgaatgacctg
cagctgaaggaccttgatgtggttgaggggtcaatgagggtcaggcagctgcaggaaact
ttacagaccttcacatgcgcacacagccccaagttcacacagcagtacgcccggctgcag
cagagaatggtgattcaggacgaactggagcgtctgcagtatttaatatcagaccagagc
ctgagcctgctgcctcagtaccagcagagaatcaacgttctgaagactctgaagtacgtc
gatgactcctgcacggtgcagctgaagggccgggtggcctgtgagatcagtaatcatgag
ctgatggtcacagagctggtgtttgagaacgtgctcagtgacctgccccccgaggagatt
gcggccctgctctcctgcctcgtcttccagcagaaaacacaggtcacccctgagatcagc
acctccctgcagcagggtgtgcaacgcatcgtgagtgtggcggagcgcattgccactcta
cagagagattgtgggatgaacgagtctgtggaggattttgtggctcagttcaaattcggg
ctgctggaggtggtgcactgctgggcccgggggctgcccttctcggagatcgctcagctc
acggatgtgcaggagggcattgtggtgcgctgtatccagcgattggatgagacgtgccgt
gacgtgcggaacgctgcgcgcatcatcggtgacccagtgctgtatgccaagatggagcag
gcctccatgatgatcaagagagacattgtgtttgccgccagcctctacacccagtga
DBGET
integrated database retrieval system
