KEGG   Polyodon spathula (Mississippi paddlefish): 121298616
Entry
121298616         CDS       T07273                                 
Name
(RefSeq) RNA-binding protein MEX3B-like
  KO
K15686  RNA-binding protein MEX3 [EC:2.3.2.27]
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pspa03019]
    121298616
   04121 Ubiquitin system [BR:pspa04121]
    121298616
Enzymes [BR:pspa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     121298616
Messenger RNA biogenesis [BR:pspa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     121298616
Ubiquitin system [BR:pspa04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    121298616
SSDB
Motif
Pfam: KH_1 KH_Vigilin zf-C3HC4_3 KH-I_KHDC4-BBP zf-C3HC4 RING_XB3-XBAT31 KH_2 zf-C3HC4_2 Prok-RING_4 KH_DEAH11_2nd zf-RING_UBOX zf-RING_5
Other DBs
NCBI-GeneID: 121298616
NCBI-ProteinID: XP_041081674
LinkDB
Position
24:complement(12919758..12923946)
AA seq 554 aa
MPSSLFSDMERNGSNGETLDDQRALQIALELSLLGLDNDDSSVYDNEPRRKSVNMTECVP
VPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGDEPVFVVTGRREDVAMARREIISAA
EHFSMIRASRNKNSSLNGAATVPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQ
THTYIVTPSRDKEPVFEVTGMPENVDRAREEIEAHIAVRTGGLIELTDENDFHANGTDVG
FELHGPGSLWSKPTPSMTPHAGRKPFSNYRNDSSSSLGSASTDSYFGNNSSSRPADYSPP
SPALSYTASSNGNHNNNNNNNNNNVNINVNVHGNGNGFIYGSDVISPDCTDLAFDSPPGF
DPAPAPPGSTPIWSQYERNVATSTTITTTTAIYPTSASTNTNGIIANQRRVNGVGCTAKP
RLSPPLQHVTGLAEHPLARRVRSDPGGGGLSFPGYTSNGLSSGIASLSGSPLSGVPSDSS
SSSSSSSSSSTSSGTGRKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKNEPKCP
VCHAAVSQAIRIFS
NT seq 1665 nt   +upstreamnt  +downstreamnt
atgccaagctcacttttttccgacatggagaggaacggaagcaacggggagaccctcgat
gaccaaagagccctgcagatagcattggagctttctttgctgggtttggacaacgatgac
agttccgtctacgataacgaaccgagaagaaagagcgtgaacatgaccgagtgcgtcccg
gttccaagctcggagcatgtagccgaaattgtcggaaggcaaggatgtaaaatcaaagct
ctcagagctaagaccaacacctatatcaagaccccagtgcgtggggatgagccagtcttt
gttgtgaccggcagaagggaagatgtagcaatggccaggagggaaatcatctcagccgca
gaacatttctccatgatccgagcctccaggaataaaaacagcagcttaaacggggctgcc
acagtcccggggccacccaacctccctgggcagaccaccatccaggtgcgggtgccctac
agagtggtggggctggtggtgggacccaagggggcgaccatcaaacgcatccagcagcag
acacacacctacatcgtcactccgagcagggataaagagccagtctttgaggtcacgggc
atgcctgagaatgtggaccgagcccgggaggagatcgaagcacacatcgccgtgcgcacc
gggggtctgatcgagctgacagacgagaacgacttccacgccaatggcaccgatgtggga
tttgagctccatggcccaggtagcctgtggagtaagcccacgcccagcatgaccccccat
gcagggcgcaagcctttctccaactaccgtaatgacagctccagctctctgggcagtgcc
tccacagattcctactttgggaacaacagcagttccaggccggcagattacagcccgcca
agccctgccttgagctacaccgcttcaagcaatggcaaccacaacaacaacaacaacaac
aacaacaataacgtcaacatcaacgttaacgtccatggcaatgggaatggatttatctat
gggagtgatgtcatttccccagattgcactgacttggccttcgactccccaccagggttt
gaccccgcacctgccccgcccgggtcaaccccgatctggtcccagtacgaacgcaacgtg
gccacttctaccaccatcaccaccaccactgccatctacccaaccagtgcttccactaac
accaatgggatcattgcgaaccagagacgggtgaacggtgtggggtgcaccgccaagcct
cggctctccccgcccttgcagcacgtcaccgggcttgcagagcatcctctggcacgcaga
gtgcgtagtgatcccggaggtggaggcctcagcttccctggctataccagcaacgggctt
tccagtggcattgcctctctctcggggtcccccttgtctggggtcccctctgattcctct
tcttcgagctcttcatccagctcctcctctacctcgtctggtacagggaggaagggcagc
cgggattgctcggtttgctttgagagcgaagtgatcgcggccctggtcccgtgtggccac
aacttgttctgcatggaatgtgcgaaccgcatctgtgagaaaaacgagcccaaatgccct
gtctgccacgctgcagtttctcaggctatacgtatattttcataa

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