Polyodon spathula (Mississippi paddlefish): 121298805
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Entry
121298805 CDS
T07273
Name
(RefSeq) antigen peptide transporter 2-like isoform X1
KO
K05654
ATP-binding cassette, subfamily B (MDR/TAP), member 3 [EC:
7.4.2.14
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa02010
ABC transporters
pspa04145
Phagosome
pspa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121298805
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
121298805
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121298805
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pspa02000
]
121298805
Enzymes [BR:
pspa01000
]
7. Translocases
7.4 Catalysing the translocation of amino acids and peptides
7.4.2 Linked to the hydrolysis of a nucleoside triphosphate
7.4.2.14 ABC-type antigen peptide transporter
121298805
Transporters [BR:
pspa02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
121298805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
AAA_29
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
121298805
NCBI-ProteinID:
XP_041081967
LinkDB
All DBs
Position
24:23342877..23364919
Genome browser
AA seq
752 aa
AA seq
DB search
MLSFSGAVNLVLKGLDHSAAVMNVISVVISFLACDIAASSLLHCGLLLLPLTLDPFGAES
LLCLWLVALVKLALLSQTSLSLLSQAGRGSAVMGRGPLLYVAALCALTPALQSWQRAVYV
KPVEIVTGSPCLGFCLLANAVTATACLFWETAFPCSAGTEAEGSSGEEKKQQQAKDLFMR
VIGYSKPDTFLLGGAFLFLSLAVIFEMFIPFYTGKVIDILGSRYKQNAFSSAILFMGLFS
LGSSLSAGLRGGLFMCSLSRLNKRVRVMLFRALVKQEIGFFETTKTGDITSRLSTDTTLM
SQSVAMNMNVFLRSLMKTLAMLSLMLSLSWRLTLVTVIETLLISIIQNIYNSYYQRLAKE
VQDSIARSNEAAGEAVSAIKTVRSFATEDTEAKRYDSKLSDTQRLKNSRDTIRAAYLLLR
RLITLAVQVLMLYYGRSLIKAGEMSTGSLVAFILYQRDLGSHIRALVYICSNMLNSVGAA
AKVFEYLDRRPMVSTDGTLQPETLRGHVQFNNVCFTYPSRPDVPVIKSVSFELHPGEITA
LVGPSGGGKSTCVSLLERFYQPQSGEILLDGAPLQEYQHSYLHRKIALVGQEPVLFAGSI
KDNIGYGLPDCSLEQAQEAARRANAHGFVTSLERGYSTDAGERGGQLAGGQKQRIAIARA
LVRNPQLLILDEATSCLDIESEHAIQESLSRTQGQTVLVIAHHLKTVEKADRIIVIEGGE
VREQGSHQELMRREGSYHRLVQGLFTETQPPQ
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgttgtcattctcaggtgctgtgaatctagttttgaagggacttgatcattctgctgca
gtgatgaatgtgatctctgtggtgatatccttcctggcgtgtgatatcgcagccagctcc
ctgctgcactgtgggcttctcctgctgcccctcacgctggatcccttcggggccgagtcg
ctgctctgcctctggctggtggccctggttaaactggccctgctcagtcagacctccctg
agtctcctctctcaagctgggagaggcagtgctgtgatgggccggggccctctgctctat
gtggccgcgctgtgcgctctcactccggctctccagagctggcagcgggcggtgtatgtg
aagcccgtggagatcgtcaccggctcgccgtgccttggcttctgcctgctggccaatgca
gtgacggcgacggcctgcctgttctgggagaccgcgttcccttgcagtgccgggaccgag
gcagagggctccagcggggaggagaagaagcagcagcaagccaaggacttgttcatgagg
gtgattggatactccaaaccagacaccttcctgctgggaggcgccttcctgttcctatcg
ctggcagtgatattcgagatgttcattcccttctacactgggaaggtgattgacatcctg
ggctccaggtacaagcagaacgccttcagcagcgccatcctcttcatgggcctcttctca
cttgggagctctctctctgcggggctgcgcgggggtctcttcatgtgctccctgtccaga
ctcaacaagcgtgtgcgggtcatgctcttcagagcgctggtgaagcaggagatcggcttc
ttcgagaccaccaagacaggtgacatcacgtcccggctgtccacagacaccacgctgatg
agccagtccgtggccatgaacatgaacgtgttcctgcgcagcctgatgaagacgctagcc
atgctgtccctcatgctcagcctgtcctggaggctgaccctggtcaccgtcatagagacc
ctgctgatcagcatcatccagaacatctacaactcctactaccagcgtttagccaaagag
gtccaggactctatcgcgcggtccaatgaggcggcgggggaggcggtctctgctattaaa
acagtgcggagcttcgctacagaggacactgaagccaagagatacgacagcaagctgtca
gacacgcagagactcaagaacagcagggacaccatcagagctgcctacctgctgttgaga
aggctcatcactctagcagtgcaggtgctcatgctgtactacgggcgtagtctcattaaa
gcaggtgagatgagcacgggcagcctggtggccttcatcctgtaccagagggatctgggc
tctcacattcgggctctggtgtacatctgctctaacatgctgaactcggtgggggcggct
gccaaggtgtttgagtatctggatcgcaggccgatggtctccactgacggcaccttgcag
cccgagaccctgagaggacacgtgcagttcaacaacgtctgcttcacctaccccagcaga
cccgacgtgcctgtgatcaagagcgtctcgtttgagctgcaccccggtgagatcacagct
ctggtgggcccctctggcggagggaagtcgacgtgtgtgtctctgctggagcgcttttac
cagccccagagtggggagatcctgctggacggggctccccttcaagaataccagcactcg
tacctgcacagaaagattgccctggtgggtcaggagccggtcctctttgccggctccatc
aaagacaacatcggctacgggctcccagactgctctctggagcaagcccaggaggcagcg
cggagagccaacgcacacggcttcgtgacgagcctggagcgtggctacagcactgacgcg
ggtgagaggggggggcagctggctggaggacagaagcagcgcattgcgatcgccagagct
ctcgtcaggaacccacagctcctcatcctggacgaggccaccagctgcctggacatcgag
agcgagcatgcgatccaggagtctctgtctcgcacccagggtcagacggtcctggtgatc
gctcatcacctgaagacggtggagaaggctgatcgtatcatcgtgattgagggtggggag
gtgcgggagcagggctctcaccaggagctgatgaggagggagggcagctatcacaggctg
gtgcaggggctcttcacagagacacagcccccgcaatag
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