Polyodon spathula (Mississippi paddlefish): 121298807
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Entry
121298807 CDS
T07273
Name
(RefSeq) PDZ and LIM domain protein 5-like isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121298807
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
121298807
Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
121298807
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
Motif
Other DBs
NCBI-GeneID:
121298807
NCBI-ProteinID:
XP_041081972
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All DBs
Position
2:59453704..59669436
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AA seq
631 aa
AA seq
DB search
MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISKLTDGGKAAKASIVVGDVVLSIDGISTNG
MTHLEAQNKIKACTGSLNLTLQKSSGDAKHASVPKDEPQEIFKPSPLPTAPKITPSPSAA
YNKTAKPFEATAAPKVASIPSASSAFTPASTPHSFAAPPPPTFATAAAPPPPAVYASTKA
KPILEGHMPPPSAAKVTVAPSVNVPPQPSVYNTPIHLYSNNNACEVAEGQRRGLNQRDAA
QHNGGPPSILKKNAPRRAPRKHIVDTDIEFNHVPTHGDASKKRLIEDTEDWHPRTGTSQS
RSFRILAQITGTERMQEQETDSSKKNDAVELLQPSTHVTSSVKTMTKAPGNIPRPSPGNV
APVPAFKSTAAPVAAKSAGWQLSNAAASGFQKDAPNTGHITYASGHVSNSSLQYGAKAHP
ANTMSRPAPQPHPKDQDTLIQRAEHIPAGTRTPMCGHCKMVIRGPFLVAMGKSWHPEEFT
CAHCKTSLADIGFVEEKGSVYCEHCYEEFFAPTCGRCQLKILGEIINALKQTWHVHCFLC
TSCHQPIRNNVFHLEDGEPYCEQDYYNMFGTSCHGCDFPIEAGDKFLEALGYIWHDTCFV
CSVCSTNLEGQTFFSKKDKPLCKKHAHSINM
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgagcaactacagcgtgtccttggttggcccagctccgtggggtttcagactccagggt
gggaaagacttcaacatgccactgactatctctaagttaaccgatggagggaaggcggcc
aaggccagcattgtagttggagatgtggttctgtctattgatgggatcagcactaatggg
atgactcacctggaggcccagaacaaaatcaaggcctgcaccggttccttgaacctgact
ctgcaaaaatcttctggtgatgcaaagcatgcttcagttccaaaggatgagcctcaggag
atatttaaaccatctcctcttcctactgcacccaaaatcacaccttctcccagcgcagcc
tacaataagacagctaagccttttgaagctactgcagcacccaaagttgcctccattcca
tcagcatcatcagcgttcacacctgcttccactccccattcctttgctgctcccccacca
cccacctttgcaacggctgctgcccctcctccacctgcagtatatgcatctacaaaagct
aaacccattctagaagggcacatgcccccacccagcgcagctaaagttacagtagcacca
tccgttaatgtcccaccgcagccctctgtctataatacccccatccatctctactccaac
aacaatgcctgcgaggtcgcagaaggccagagaagaggactgaaccaaagggatgctgca
cagcacaatgggggccctccaagcattctaaagaaaaatgcacctagaagagcaccaaga
aaacacattgtggacacggatattgaatttaaccatgttcccactcacggagacgccagt
aagaaacgcctgattgaggacactgaagactggcatcctcggacaggcacttcccagtca
cgctccttccgcatcctggcccagatcactggcactgaacgcatgcaagaacaagaaact
gattcttctaagaaaaatgatgctgtggagctactccagcccagcactcatgttacttct
tctgtgaagaccatgaccaaggctccgggcaacatcccccgaccttcacctggaaatgtt
gcaccagttccagcatttaaatccactgcagcccctgttgctgccaaatctgcaggctgg
cagcttagtaacgcagcagcatctggatttcaaaaggatgctcctaatactggtcacata
acatatgcctctggccatgtgtcaaacagctctcttcagtatggagcaaaagcacaccca
gccaataccatgagcagaccagccccacaaccacacccaaaagatcaggacacgctgatc
cagagagcagagcacatcccggctgggacccgcacccccatgtgtgggcactgcaagatg
gtcatcaggggccctttcctggtggccatgggaaaatcttggcatcctgaggagtttacc
tgtgctcattgtaaaacctccttggcagatattggttttgtggaagagaagggttctgtg
tattgtgagcactgttatgaagaattctttgcccccacctgtggcaggtgtcaactgaag
attcttggggaaattatcaatgctctgaaacagacctggcatgtccactgtttcttgtgt
acgtcttgtcatcagccaatccgcaacaatgttttccatttggaggatggggagccctac
tgtgagcaagattattataacatgtttggtacaagctgccatggttgtgacttccccatt
gaagctggagataagtttctggaagccttgggatatatttggcatgacacctgttttgtg
tgttcagtatgttctacaaatctggagggtcagacttttttctcaaaaaaggataagccc
ttatgcaagaaacatgcccattcaattaacatgtaa
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