Polyodon spathula (Mississippi paddlefish): 121298874
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Entry
121298874 CDS
T07273
Name
(RefSeq) C-myc promoter-binding protein-like isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121298874
Membrane trafficking [BR:
pspa04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
121298874
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
DUF2464
PPR_3
PPR_long
PPR
Papo_T_antigen
Motif
Other DBs
NCBI-GeneID:
121298874
NCBI-ProteinID:
XP_041082071
LinkDB
All DBs
Position
24:13845225..13882436
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AA seq
1971 aa
AA seq
DB search
MMEDKGFRVADYFVVAGLTDSSIPLEEEIHFNDICHKIAKPKAPITDVAVIIKSLGEEVP
QGYTCVDTTPTGLSAELNNGSLMGPQIFLCYKRGRDKPPLTDLGVLYEWKERLKQGCHII
QTTPSGRPANISSPSSQRIYVTYRRAPDSMSQTSLAVTDICIIIPSKGETPPHTFCKVDK
NLNSSMWGSSVYLCYKKSVAKTNTIAYKAGLICRYPEEDYESFPLPESVPLFCLPMGATI
ECWPAQTKYPLPVFSTFVLTGSSGEKVYGAAIHFYEPHAKENLSDKQRSQLGLISATDRK
PIVSKTIHTNKCICLLSHWPFFDAFRKFLTFLYRYSISGPHVLPIEKHVSHFMHKVPFPS
PQRPRILVQLSPHDNLILSQPVSSPLPLSGGRFTTLLQNLGPENAITLLVFAVTEHKILI
HSLRPAVVTSVTEALVSMIFPFHWPCPYIPLCPLALADVLSAPCPFIVGVDSRYFDLYDP
PPDVSCVDLDTNTISHPEDKRALTWKILPKKACKNLMNLLNNIYQELAESQQRPREDGLM
ELTMSDYDFNSGKSLQTLEMEIQEAFLRFMASILKGYRSYLRPITQAPSEKATDASSLFD
LQGFLKSRDRSHQKFYSLMTKTQMFIRFIEECSFVSDKDASLAFFDDCVDKLFSTEHSTD
KGIKVDLDKLEDMRLIELDESQRSEHTVFITPPELPALPDGEEHPLQYSYNGFPVLILEL
FDRPDGLLKTPATRLTSKQSSPTSPAPMFRRTKQEIKSAHKIAKKYSSIPQMWSKCLLRH
CYGLWFICLPAYVKVCHSKIRALRTAYDVLRKMQVKKLEPPDEVCYRVLMQLCGQYGQPV
LAVRVLFEMKKAGVHPNAITYGYYNKAVLESTWPSSTRGGYFLWMKLRNVLLGVVQFRRA
LKKPPSHPPQTPVSADGSDLDAVSHGSLDSSNDTNTAEQAPFSTDLIKVDSTDDRSSTAS
CGYGSLVEHMYHMEKIPYPTQWISSEIRHPSVLQGCQSDLGYNSLSKEEVRRGDAATQDG
PVEKEDKKESDSSSLSESESVKGSGDSVPQFDCQEAACGFKPTGGIVRNPFEAISESGDT
SNDRVAGLMFTTCLEEIGYVQNNSLRKRHKSAVEGSVKEPMSWGDRNRNLSGDTILGLQM
NKGGCVETDTRKMAEKLGADIKILANTFQKTVRPNTLDIGNGTHRSKTVKRDSPGKDSSD
EDVAFEADKIDSPSIFNLEDIDDELASAGKSVKAVARKPRRVERSSSSSFTARPVKTGFD
PLSLFAAQTEQQIEEEEEVRSLSTPSARRELAEEIEMYMNNMSSPLVSRAPSVDLQGATN
DDPTCIQGPSEEEKNSRRSCLPPSSPRAVGLPRSRTYHSRTDSKLRDRLWSSPSFSSNSP
QRELPPDPEGAVALMSPSSFNLDTLLTPTFDVLKSSMFSAGKGVAEKASKWYSRFATYST
SSKDLNYDRSSISSGGLIDPESSSLMDDDVYSEYEGAASPQANNIAYVAKGVGQSQTSHD
SSSKQPHHTGSVLSTGSSFPLPDKSELDSSRYTSNTSIFQNYAMEVLISSCSRCKTCDCL
VYDEEIMAGWTADDSNLNTTCPFCGSPFLPFLNIEIRDLRGPGRYFLKYGPSVEEGASTA
CSTAPNMEIRNSVISHADPDMAMSPKITVQECPDPDSRSTRCGCAPAKSIEIPLERKWGV
SDSGCAGHPMARSATTFGPLEEDDAPRRNTHSVPTGSLPSKFSDVADLLSFEWRLHNPDP
VTVPYLSPLVLWKELESLLENEGDHVITVADFVDHHPIVFWNLVWYFRRLDLPSNLPGLI
LSSDHCNRGSKVPRNWLSEDSKHVLIQILWDNLKLHQDPGQPFYILWNTHSVKYPMVDAV
QKGEEPFSEEFLQSVVKSIQLNDVYRPMSQILEILGKQLGMKRQRSLYREILFLSLVALG
KDNIDIDAFDREYKMAYDRLTPSQVKFTHNCDRPPSTGVMECRKTFGEPYL
NT seq
5916 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagacaaaggctttcgtgttgccgattactttgtggtggcgggtttgactgat
tcatccataccactcgaggaggaaatccacttcaatgacatctgccacaagatcgccaaa
cccaaagccccgatcacagacgtggccgtcatcatcaaatcgctaggagaggaggtgcca
caaggctacacgtgtgtggacacgactccaacaggactgtcagcagagctcaacaatggc
agcctcatgggaccccagatcttcctgtgctacaagagaggcagggataaaccacctctc
actgatcttggggttttgtatgagtggaaggaaagactcaagcagggctgtcatattatt
caaaccactccttccggccgccctgctaatatcagcagcccctcctcacagaggatatat
gttacttaccggcgggccccagacagcatgtctcagacttccctggccgtgacagacata
tgtataatcattccaagtaaaggagagaccccaccacacaccttctgcaaggtggacaaa
aatctcaatagtagcatgtggggctcgtccgtgtacctttgttacaagaagtctgtggca
aagaccaataccatagcatataaagctggtttaatttgcaggtatccagaagaagactat
gaatcattccctttacctgaatctgtgcctctcttctgcctgcccatgggtgcaacgatc
gaatgctggcctgcccaaactaaatacccgctccccgttttctctacattcgtattgaca
gggtcttccggagaaaaggtgtatggcgctgcaatccatttctacgagccccacgcgaag
gagaacctcagtgacaaacagcgctcccaactggggctgatcagcgccaccgatcgcaaa
cccattgtctccaaaaccatccacaccaacaagtgcatatgtctgctctcccactggcct
ttctttgatgcctttaggaagtttctgacattcctgtaccgatactcgatctccggccct
catgtactacccattgagaaacatgtctcccatttcatgcacaaagttccttttccatcg
cctcaaaggccgagaatcttggtacagctgtcgccacatgataacttgatactgagccag
cctgtgtcgtcgccattgccacttagtggtggcaggtttactaccctgctgcagaatctt
ggccctgagaatgcgatcacgctgctggtgtttgcagtcacagaacacaagatcctgatc
cactcactcaggccagccgtggtcacaagcgtgacagaggcgttggtctctatgattttc
cctttccactggccctgcccgtatattcctctttgtcctttggcattagcagatgtgctg
agtgccccttgcccattcatagtgggggtggattcgagatactttgacctgtatgatccg
ccgccagacgtcagctgtgttgatctggacactaacacgatatcacatcctgaagataag
agggctttgacgtggaagattctgccaaagaaggcttgcaaaaatctgatgaatttgttg
aataacatttaccaggaactagcagagtcacaacagagaccaagagaagatgggttgatg
gagttaaccatgagtgactatgattttaactctgggaagagtctgcaaaccctggaaatg
gagatacaggaggcattcttgcgcttcatggcctcgatactgaagggataccggtcatac
cttcgtcccattacacaggccccctctgagaaggcaactgatgcgagctctctgttcgac
ttgcaaggcttcctgaagagtcgggatcgctctcaccagaagttttactcgctgatgacc
aagacgcagatgtttattcggttcattgaagagtgttccttcgtcagtgacaaggatgca
agtctggcatttttcgatgattgtgtagataaactgttcagcacagagcacagtactgat
aaaggaataaaggtggacctggacaagctggaggacatgcgtctgattgagctggatgag
tcccagcgcagtgagcacaccgtgttcatcaccccccctgagctgccggcgctacctgat
ggagaggagcaccctctgcagtacagctacaatggctttccagtgctgatcctggagctg
tttgatcgtccggatggtttgttgaagaccccggctaccagactgacctcgaagcagagc
tctcccactagccccgcacccatgttcaggaggactaaacaggaaatcaagtcagcccac
aaaattgcaaaaaagtactcctccataccacagatgtggtccaagtgtctcttgcggcat
tgctacggcttgtggttcatctgtctgcctgcgtacgtcaaagtgtgtcattcgaagatc
agggctctgagaacggcatacgatgtgttgagaaaaatgcaagtcaagaaacttgagcct
cctgacgaggtgtgttaccgtgttctgatgcagttgtgtggacagtatggtcagccagtt
ttagcagttcgggttctttttgaaatgaagaaggctggagttcaccccaatgctattaca
tatggctattataacaaggctgttttagaaagcacctggccttccagtactaggggtggc
tactttctctggatgaaactgagaaatgtccttctaggagttgtgcagttcagaagagcc
ttgaaaaaacccccgtcacaccccccccagacccctgtctcagcagatggcagtgacctg
gatgctgttagtcacggcagcttggatagctctaacgacactaacacagcggaacaggct
ccgttcagcactgatttaatcaaagtagattctactgatgatagatctagcacagctagc
tgtgggtatggcagtctagtagagcacatgtaccacatggagaaaattccataccccaca
cagtggattagttctgaaatcagacatcccagtgtccttcaaggttgtcagtctgacctc
gggtacaactctctgtcgaaggaggaggtgaggcgtggagacgctgccactcaggatggt
ccagtggagaaggaggacaagaaggagagcgactccagctcgctttcagaaagcgagagt
gtaaaggggagtggggactctgttcctcagtttgattgtcaagaagcagcctgtggattt
aaacctaccgggggaatcgtccgtaacccctttgaggcaatcagcgagtccggcgacaca
agcaatgatcgtgttgcaggacttatgttcaccacctgtttagaggagattggctatgtt
caaaacaacagtcttcggaagagacacaagagtgccgtggaagggagtgtgaaggagccg
atgagctggggagaccggaaccgcaacctcagcggagacacaatcctggggctgcagatg
aacaaaggggggtgtgtggagactgacaccaggaagatggctgagaaactgggagccgac
atcaagatccttgcaaacactttccagaagaccgtgagaccaaacactctggacattgga
aacggcacccacaggtcgaaaactgtaaagcgagacagcccggggaaggactccagtgac
gaagacgtggctttcgaagctgataaaatagactcgcccagcatcttcaacctagaggac
attgacgacgagctggccagcgctgggaagtctgtgaaagcagtggctcggaagccacgc
agggtggagaggtccagcagcagcagctttacagccaggccggtcaagacaggcttcgac
cctctctccctgttcgcagcccagacggagcagcagattgaggaggaggaggaagtgagg
agcctctccaccccctctgcacggagagagctggcagaggagatcgaaatgtacatgaac
aacatgagcagccccctggtcagccgagcccccagcgtggacctgcagggggcgacgaac
gacgaccccacctgtatccagggcccctcggaggaggaaaagaactccaggagatcctgc
cttcccccaagctcccccagagctgtggggcttccacgctccaggacctatcactccagg
acagacagcaagctaagagacaggctgtggtcgtctccctccttctcatcgaacagcccg
cagagggagctgcctccagatcccgagggagcagtggcgctgatgtccccgtcgtctttt
aatctggacaccttactaacacccacctttgatgtgctcaagagcagcatgttttcagct
gggaaaggagtagcagaaaaagccagcaagtggtattccagatttgctacctactccaca
tcgtctaaggatctgaattacgacagatctagcatatcgtctggtgggttgatagatcct
gagtcctcttcattgatggatgatgatgtctacagtgaatatgaaggggcagcgtcccct
caagcaaacaacattgcgtacgtggctaagggggtgggacagagccagacatctcacgac
agctcttcaaagcagccacatcacacgggtagtgtactgtccacaggatccagcttccca
ttgcccgacaagtcggaactggattcgtctcgttacaccagcaacaccagtatatttcaa
aattacgccatggaggtcctcatttcaagctgctcgcgctgtaagacctgcgactgtctg
gtctatgacgaggagatcatggcaggatggactgcagacgactcgaacctcaacaccacc
tgtcccttctgcgggagtcccttcctgccctttctcaacattgagatccgtgacctccga
ggtcccggcaggtactttttgaagtacggcccatctgtggaggaaggcgcgtccacagcc
tgctctacggctcctaacatggagatcaggaattctgtcatctcccatgctgacccagac
atggccatgtctcctaaaatcacagtacaggaatgcccagatcccgacagtagaagcact
cgctgtgggtgcgcccctgctaagtccatagagattcccttggagagaaagtggggtgtc
agtgattcaggctgtgcggggcaccccatggctcggagtgctaccaccttcggtccactg
gaggaggacgatgccccccgaagaaacacccacagtgtacccacagggagcttgccctcc
aagttcagtgatgttgcagaccttctgagctttgaatggaggctacacaacccagatccg
gtcacggttccctatctcagtcctctcgtactgtggaaggaactggaaagcttgctggaa
aacgaaggggatcatgtgataacggtggcagacttcgtggaccatcatcccattgtgttc
tggaatctggtgtggtatttcagacggcttgatctgcccagcaatttgccaggcttaata
ctgtcctctgatcattgcaacagagggtcaaaggttcctcgaaactggttgtcggaagat
agcaaacatgttttaatccagattctgtgggacaatcttaaactacaccaggatccagga
cagccattctatatcctgtggaacacacacagtgtgaaataccccatggtagacgctgtt
cagaagggagaggagcccttcagtgaagagttcttgcagagcgtggtgaagagcattcag
ctgaacgacgtctatcggcccatgagtcaaatcttagagattctgggcaaacaactgggc
atgaaaagacagagaagcttatacagagaaatcctgttcctttctctggttgccctcgga
aaagacaacattgatattgatgcttttgatcgagagtacaagatggcctatgatcgtctg
actcccagccaggtgaagtttacacataactgtgatcgtcctcccagtactggagtcatg
gagtgccgtaagaccttcggagaaccatatctgtaa
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