Polyodon spathula (Mississippi paddlefish): 121298916
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Entry
121298916 CDS
T07273
Name
(RefSeq) transmembrane channel-like protein 3
KO
K21988
transmembrane channel-like protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pspa02000
]
121298916
03037 Cilium and associated proteins [BR:
pspa03037
]
121298916
Transporters [BR:
pspa02000
]
Other transporters
Pores ion channels [TC:
1
]
121298916
Cilium and associated proteins [BR:
pspa03037
]
Other cilia and associated proteins
Stereociliary proteins
121298916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
Motif
Other DBs
NCBI-GeneID:
121298916
NCBI-ProteinID:
XP_041082163
LinkDB
All DBs
Position
24:complement(12768406..12783332)
Genome browser
AA seq
1127 aa
AA seq
DB search
MSTVSEPVAITRSARSSKRSKSVRKNSRRIYSHYQDQQASNSDEDDKGDERTDSNDPEEI
FQNIQIQKEIIANIRTRSWPMRQKLKVLKQAKEIVLKFEGRLTRTRGYQAAGAEMLKKLS
RLAYNIVVLFIPWEMRIKKIESHFGSGVASYFIFLRWLFGINIVLTVMTGAFVVLPELLA
GASFGTTSSKTIPKEHLASAQDLDTIWSLGGYLQYSVLFYGYYGKDRKIGNAGYRLPLAY
FMVGMAVFAYSFIILLRKMAKNSRLSFASASDENYTFCWRVFCAWDYLIGNPEAAQSKGA
AIVNNIREAILEEQEKKKDTSLAVLISLRILANILVLLSLAGSIYIIYFVVDRSQKLEQE
KPELTLWEKNEVSVVVSLITMIAPSAFELVAQLEMYHPRTMLQFQLARVLVLYLGNLYSL
IIALLDKVNIMSSAEIYSIPNNWSDSTAFLATIALPEEENLSTIVPDFMESRNSTLSVVF
QENQTKAIIPLAFNKTALYEYNMKSQQNQCWETYVGQEMLKLSIIDMLFTVASILLIDFI
RGLFVRYLSDCWCWDLESKFPEYGEFKIAENVLHLIYNQGMIWMGAFFSPCLPAVNVLKL
IGLMYLRSWAVLTCNVPHQQVFRASRSNNFYLTMLLFMLFLCMLPTIFAIARYRPSATCG
PFSGQEKIYDIISETVANDFPLWFRTVMDYVTSPVVVLPALLLLFMLIYYLQSIARSLKV
TNNQLRMQLQTERTEDKKKVYQMAVSRIITHEGNDKKPDQESDITSQDSSLRSSSPRRNG
SVMNFESPVSRGNSIRTISQSASRSDVSRATTASQIPPVPILQKHRMEHIPNRHPGGLQG
GASAACRSKSYHNVVYNPSNRFTENVHSDPLFRKNIRPVHPEAMGGGAQGFISRRAQTTR
YVIVNEHEARKKLQRSSTRILRHYRVEEPGDIVEFYPKNIKRYTVRTPQRSHQPHVSEEE
EEEEEEAGGMRRGSLSKSHRPRSLSDLYQPACFYIGDSVGSQLAITKDLAKVHYGAYGDN
CEMDWEDTASQPRSRTKIRSTEQVGRHLEPHVKPKRKLKVKPSLTESDSASIASSSDQQN
SSTDQYIQVIHNKEKYLKPSGKLTKKKAKTSVDINGSGSSELICSNV
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactgtgagtgagcctgtggcgattaccagatcagcccgatcttccaaaagaagc
aaaagtgtgaggaagaactcgagaagaatctattcacattaccaagaccaacaagccagc
aattcagatgaagatgataaaggtgatgaaagaacagacagcaatgaccccgaagaaatc
tttcagaatattcagattcagaaggagatcatcgccaacattcgaacccgatcgtggcca
atgagacagaaactcaaagtgctcaaacaagctaaagaaattgtcctgaagttcgaaggc
aggctgaccaggaccagagggtatcaagctgcaggagcagaaatgctgaaaaagctgtca
cgcctggcatataatatagtcgtcctttttattccatgggaaatgaggatcaagaagatt
gagagtcattttggttctggagtggcttcatattttatcttcctgaggtggttgtttgga
atcaacattgtactaactgtaatgacgggcgcttttgtggtattaccagaactgctggca
ggagcgtcgtttggaaccacgagcagcaagaccattccaaaggagcaccttgcatcagca
caagacctggacaccatctggtcactggggggctatctccaatactctgtcctgttttat
ggctactacggcaaagacaggaagattgggaacgctggttaccggctgcccttggcatac
tttatggtcgggatggctgtttttgcctacagcttcatcattctgctaagaaaaatggcc
aaaaactccagattgagtttcgccagcgcctcagatgaaaactacactttctgctggagg
gtgttttgtgcttgggactacctgataggcaaccccgaggctgcacagagcaagggagct
gctatagtgaacaacatccgggaagctattttagaagaacaagaaaagaagaaagacaca
agcctggctgtattgataagtttaagaatccttgcgaacatcctggtccttctatcactt
gctggcagtatttacatcatctactttgtcgttgaccgttcccagaagctcgagcaagag
aagcctgagctgactctctgggaaaagaatgaggtcagtgtggtggtctcacttatcacc
atgattgcaccttctgcatttgaacttgttgcccaactggagatgtaccaccccagaact
atgctgcagttccagcttgccagggttcttgtgttgtatctgggaaacctgtatagctta
atcattgctttgttggacaaagtgaacatcatgagttcagctgaaatttacagcattcca
aacaactggtcagattctactgcgttcctggccaccatagcactccctgaagaagagaac
ctgtccactatagtgcccgatttcatggagagcaggaacagcacgttgagtgtagtgttt
caggaaaaccaaaccaaggcaatcataccactagcgttcaacaagactgctctgtatgaa
tacaacatgaagtcccagcaaaaccagtgctgggaaacctatgtaggacaggaaatgttg
aagctttccattattgatatgttatttactgtggcgagtatcctcctgattgattttatc
cgtgggctttttgttcgctacttgagtgactgctggtgttgggatctggagagtaagttt
cctgaatatggagaatttaaaattgctgaaaatgttctccatttgatttacaaccaaggg
atgatatggatgggcgccttcttttcgccatgccttccagcagtcaatgttctcaagctg
atagggctcatgtacttgaggagctgggcagtgttaacgtgcaatgttccacatcagcaa
gtcttcagagcctcaagatccaataatttctaccttacaatgcttttgtttatgctgttc
ttgtgtatgctaccaacgatatttgctatcgctagatacagaccatcagcaacctgtgga
ccattcagtggccaggaaaagatttacgatattatttcagagactgttgcaaacgatttc
cctttatggttcaggactgtgatggattacgtcaccagccctgttgttgtccttccagct
ctgttacttctcttcatgctgatctattatcttcagtctattgcacgatcattaaaggtc
accaacaaccagctaagaatgcagctccaaacagaaagaacggaggacaagaaaaaggtt
tatcagatggcagtgtcgagaataataactcatgaaggaaatgataaaaagccagaccaa
gagagtgacatcaccagccaggattcctctctccgctcctcgtctcccagaagaaatggc
agcgtgatgaactttgaatcaccagtgagcagaggcaatagcattcgcaccatctcacag
tctgcatcgcgctctgatgtgagcagggcaaccacagcatctcaaatcccaccggttccc
attttacagaaacacaggatggaacacattcctaacaggcatcctggaggtttacaaggt
ggtgcaagtgcagcctgcagatcaaagtcctaccacaatgtagtctacaacccttcaaat
aggtttacagagaacgtccactcggaccctcttttcagaaagaatatccgtcccgtgcac
ccagaagccatgggaggaggggcccagggtttcatcagccggagagcacaaaccactcgc
tatgtgatagtcaacgagcatgaagccagaaagaaactgcagcgctcatctaccagaatc
ttgaggcactacagggtggaggagccaggagacatagtggagttttatccgaagaatata
aaaaggtacactgttcgaacaccccaaaggtcacaccaacctcacgtcagtgaagaggaa
gaagaggaggaggaggaggcaggaggaatgcgaagaggctctttaagcaaatcccatcga
cctcgctccctgtcagacctctatcaacctgcgtgtttttacatcggtgacagcgtaggc
agccagctagccatcaccaaagacctggctaaggttcactatggagcctatggagataac
tgcgaaatggattgggaagacacagcttcccagcctcgttccagaacaaaaatcaggagc
acggagcaagtggggcgtcacctggagccgcatgtcaaacccaaaaggaagctgaaggtt
aaaccttccttaaccgagtcggactctgcgtccatcgcgtcgagcagcgatcagcaaaac
agcagcactgaccagtacattcaggtcattcataacaaagagaaatacttgaaacccagc
ggcaagcttacgaaaaagaaagcaaagaccagtgtagacataaacggttcaggatcaagc
gaactgatttgttccaatgtttaa
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