Polyodon spathula (Mississippi paddlefish): 121298924
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Entry
121298924 CDS
T07273
Name
(RefSeq) DNA-binding protein RFX7-like isoform X1
KO
K09175
DNA-binding protein RFX7
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121298924
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Other basic domains
RF-X
121298924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFX_DNA_binding
Pox_D5
Nop53
DUF648
Presenilin
Motif
Other DBs
NCBI-GeneID:
121298924
NCBI-ProteinID:
XP_041082182
LinkDB
All DBs
Position
24:complement(10621311..10655507)
Genome browser
AA seq
1411 aa
AA seq
DB search
MSSSRTQQMHAFNWIRNHLEEHPETSLPKQEVYDEYKSYCDNLGYHPLSAADFGKIMKNV
FPNMKARRLGMRGKSKYCYSGLRKKAFVHMPSLPNLDFHKTGDGPEGMESSGQLQNAEED
VRSAACDLVCEWAQKVLSRQFDAVEDLARFLLNSHYIGTKSMAALTVMTGAPTGMKTPTQ
TSAFVPTTETNSFQPQVKTLPSPSVDAKQQLQRKIQKKQQEQKLHSPLPGEAHGRRVDGG
TPGPVPCIHRGSPALLSPQPTIGIVVAAVSSPVTVQRNRQLVTSPSPVGTPEGKVLPVNF
QVVAQHMHSMKQSPKTPQNIPASPIDRSARHRYPQILPKPCATSALTLRSPTTVLITNSP
IKTVVPTPHVSSVNVVKMTAISLTPSNSGTALRPASAGNSGTGAAEEPRAGLQIRHGSVV
SLQSPVARSNSVTTTPTVEIKMEPEAITDESQTLSTERLAGTQEASGGQGGGCVKLRAIS
DPATQAKGSPGGGGEARPEETRTKGDAKSHLDNTVVASTVSNNNPNTFFIAISNPNTSMT
LSSNGNAASSPKESLAGSKSPRKRSTSLASESQAPPIKKVFTSQQSTISLESQKVGLSAA
VKKVTKATLPAKPDCTPAPTPGKVTVKLNSTVPTRILAQTPSDTQAAYSSSFLTVVKSQS
SQDIKVKCDGTPSSMDTGAGPGIGSDQTLLQHITGNPPVGPVNTGMLKNSGANDLQKSMW
ESVQLGVPQQDYTAQLQSHKPIQVSVVDQQQALIQGQPSNQLSLHPDMVDFVASQPNDNY
FAFDDDITQDSIVEELVLMEEQMNLNNNSYNNCLGISLQSQSTVPQGAVMSSHLTGNPFY
HSAHSSSTPVHTPTPTPTPTPTPNPTPTSEMMGGQGLSRESPCSRMAQTTPVDSALGSSR
HTPIGTPHSSCSSSVPPSPVECRNPFAFTPINSSIAYQDASIVSSSPVKPMQRPMATHPD
KAKLEWMSNGYNSVVGNAAISNNGIGILPSYQDLLDDQFRKPHAFAIPGQSYQAQARHHD
AHFGRLTPISPVQPQVASMSNLSKQEGFAVPAPLDNKGTNSSTSNNFRCRSVSPAVHRQR
NLSGSTAYPVSNLPRSSVNPFSSPVTPEVLSILTNSHSDGSANNMAQRSQSVPLNVMMLT
AVPPMQKQSNNKKITNVLLSKMDSDSDDAVRGLGINNMPSNYTARMNLTQILETTPSFPS
ANHQIQVNSSPSVYEFQKPSYLLKNSRTDQVSFSSGETQAQSDIIEQQQQQQQQQQQLQQ
QQQQLQQQQQLQQQQQQLQQQQQQQQQQLQQQQNQQQLHFNSTVKDLLGDDGLNPSSQLV
GQVASELNAVVSDFPSDIRLNSELSSSINDLNTLDTNLLFDPNQQQGQYEDSTLEELKND
PLFQQICSESVNSTGFDWLESKDQPTVEMLG
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagccgcactcagcaaatgcatgcgtttaactggatccgaaatcatctagag
gaacacccagaaacttctctccccaagcaagaagtctatgatgaatacaagagctattgt
gacaatctcggctaccatccattgagtgcagctgactttggaaagatcatgaaaaatgtt
tttccgaacatgaaggcacgtcgtctgggcatgagaggcaaatccaagtactgctacagt
ggactgaggaagaaggcgtttgttcacatgccttctttgcccaatctggactttcataaa
actggagatgggcctgaagggatggagtcctcggggcagctgcagaatgcagaggaggat
gtccggtcagctgcctgcgacttggtctgtgagtgggcacagaaagtgttgagtcgtcag
ttcgatgcggttgaggacctggcacgcttccttctcaacagccattacattggtaccaaa
tcgatggcagcactcactgtaatgactggcgcacctacaggtatgaagacaccaacgcag
acatcagcgttcgtgccaacaactgaaaccaattcgttccagccccaagtaaagactctg
ccctcgccctctgtggatgccaaacagcagctgcagcgcaagattcagaagaagcagcag
gagcagaagctgcactccccccttccaggagaggcccatgggaggagagtagatggaggg
acgccagggccggtcccctgcattcatcgggggagcccagcactgctgtcccctcagccc
accatcgggattgtcgtggcagcagtctccagccctgttacggtacaaagaaacagacag
ctggtgacctcgcccagccccgttggcacacctgaaggcaaagtccttcctgtaaacttt
caagtggttgctcagcacatgcattctatgaagcagtctcccaagacccctcaaaacatc
cccgccagcccgatagatcgatcagcgcggcatcgctatccgcaaatactgcccaaacct
tgtgccaccagcgccctcaccttgcgttcgcccaccactgtcctcatcaccaacagcccc
atcaagactgttgtgcctacacctcatgtgagctcggtgaacgtggtgaaaatgacagca
atatccttgacacccagcaacagcggcacggccctcaggcctgcttctgccggcaacagt
gggacaggggcagctgaggagccaagggcaggcctgcagatcagacatggttctgtggtc
tctctccagtctcctgtagcaaggtccaacagtgtgacgaccacacctaccgttgagatc
aaaatggagcctgaagccataactgatgaaagccaaactctcagcacagaaaggctggct
gggactcaggaggcctctggtggtcagggagggggttgcgtgaagctgagggccatcagc
gaccccgccactcaggccaagggatccccaggaggaggtggtgaggctagacctgaagag
acaaggacaaaaggcgatgcaaagtcccatttggacaacactgtggtagcctccactgta
agcaataataatccaaacactttctttattgcaatctccaatccaaacaccagcatgact
ttatcatccaatggcaatgctgcaagttctcccaaggaaagcttggccggttccaagagc
ccacggaagcgctccacaagtttggcgtctgaatcccaggccccacctatcaagaaagtc
tttacgtcccagcaatctaccatcagtttggaaagtcaaaaagtgggcctcagtgctgca
gtaaagaaggttacaaaagcaaccctgccggccaaacctgactgcacaccagcacctact
cctggaaaagttactgtgaaactcaattcaacagtcccaacacgaatcttagctcagacg
ccgtctgacactcaagctgcatattccagcagctttctgactgtagtcaaatctcagtct
tcacaagacatcaaagttaaatgtgatggaactccatccagcatggatacaggtgcaggc
ccagggattggttctgatcagacgttattgcagcatatcacaggtaatcctcctgttggc
cctgttaacacgggcatgctgaaaaactcgggggctaacgacttgcagaaatccatgtgg
gagtcggtgcagcttggagtcccacaacaggattacactgctcagctacagagccacaag
cccattcaggtttcagtggtagaccaacaacaagcactgatccagggacagccttccaat
cagttatccctgcatccagatatggttgattttgtagcatcacagccgaatgacaactat
tttgcttttgatgatgatatcacacaggacagtattgttgaagagctagtgttaatggaa
gagcaaatgaatctgaacaataattcttacaacaattgtttggggatatcgctgcagagt
cagtcgacagttccccagggggcagtcatgtcatctcatctaacaggcaaccccttctac
cactcagctcacagcagcagcactccggttcacactcctactcctacccccacccccaca
cctaccccgaacccgacccccacttcagaaatgatgggaggtcaggggttatcccgggaa
agcccctgctcgcgaatggcccagacgactcctgtggacagcgctttggggagcagccgg
cacacccccattggcacaccacactccagctgcagcagcagcgtgccccccagcccagtg
gaatgcaggaacccttttgctttcacacccataaactccagcatagcctaccaggatgcc
agcatcgtttcgagtagccctgtcaagcccatgcagaggcccatggccacccacccagac
aaggccaagctggaatggatgagcaacgggtacaacagtgtggtgggaaacgctgccatt
tcgaacaatggcatcggaattctacctagctatcaggatctactggatgaccaattcaga
aagccgcacgccttcgccatacctgggcaatcatatcaggcacaggcaaggcatcatgac
gcacactttggccgcttgacgcccatctctccagtccagccccaggtggcttccatgtct
aacctcagcaaacaggaaggttttgcagttcccgctcccctggacaacaaagggacaaac
tcctctacaagcaacaacttccgctgccgcagcgttagccctgctgtccatcgccagcga
aacctaagtggcagcaccgcctaccctgtctccaatctccccagatccagcgtcaaccct
ttcagcagccctgtgactccagaggttctcagcatactcacaaacagccattcggatggc
agtgccaacaacatggctcagaggagtcaatcggttccattaaatgtgatgatgctgacg
gcggtcccacccatgcagaaacagagcaacaacaagaagatcaccaacgtgctgctgagc
aagatggactcggacagtgatgacgcagtaaggggcctgggcatcaataacatgccctcc
aattacacggccaggatgaatctcacacagatcctggaaaccactcccagcttccctagt
gccaaccaccagatccaggtcaattccagtccttcagtatatgaattccagaagccaagt
tacctcctgaaaaacagcagaactgaccaggtcagcttttcttctggggaaacccaagca
cagtcagatattatagaacaacagcagcagcagcagcagcagcagcagcagctgcagcag
cagcagcagcaactgcagcagcagcagcaactgcagcagcagcagcagcaactgcagcag
cagcagcagcagcagcagcagcaactgcagcagcagcagaatcaacagcaactacatttc
aacagcaccgttaaggacctgttaggagatgacggcctgaacccaagctcacagctcgtg
ggccaggtggcgtcagaactcaacgccgtggtatcagattttcccagcgatatcagattg
aactctgaactttcaagcagcatcaacgatctgaacactttggacacaaatctactgttt
gacccgaatcagcagcagggacaatatgaagattctacactggaggaactgaaaaatgat
ccgcttttccaacagatttgcagcgagtcagtgaactcgaccggttttgactggttggaa
agcaaggaccagcctacagttgaaatgttgggttaa
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