Polyodon spathula (Mississippi paddlefish): 121298926
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Entry
121298926 CDS
T07273
Name
(RefSeq) paired amphipathic helix protein Sin3a-like isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121298926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121298926
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
121298926
REST complex
121298926
Heterochromatin formation proteins
Other heterochromatin formation proteins
121298926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
HHD_RTEL1
Motif
Other DBs
NCBI-GeneID:
121298926
NCBI-ProteinID:
XP_041082186
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All DBs
Position
24:5718942..5750761
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AA seq
1292 aa
AA seq
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MKRRLDEQDPVFASQQRRLASSTESFQHRVLAPAPAVYEAVSENMQPTTGIQYSIPQGYQ
VSPAADTGTLWIQVPTVAQSSSSHGHTPGTAVHSGGHHHPPTIPPHSGQVVQSHPQAPTP
TAPVQGQQQFQRLKVEDALSYLDQVKLQFGSQPQVYNDFLDIMKEFKSQSIDTPGVISRV
SQLFKGHPDLIMGFNTFLPPGYKIEVQTNDLVNVTTPGQIHHITPHGIQVQQLPLPQPPQ
HQPPPPAPATPAAAPPAAQPTPAKISKPQQSPALTPTSQSNPSIPPYASPRSPPVQPHTP
VSSTPASVPPLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEA
GGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPDANSSVLLSKTTAEKVEAVRNDHG
GTVKKPQLNNNKQRPNQNGCQIRRHSGSGATPVKKKPKLLGLKDQSLAEASKHGVGTESL
FFEKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFTWFKNFLGYK
ESSHIESFPKERATEGIAMEIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTW
VSFPSWSEDSTFVSSKKTQYEEHIYRCEDERFELDVVLETNLATMRVLETVQKKLSRMSA
EEQAKFRLDNTLGGSSEVIHRKAIQRIYGEKAPDIIDGLKKNPAVSVPIVLKRLKTKEEE
WREAQRGFNKIWRELNEKYYLKSLDHQGINFKQNDTKVLRSKTLLNEIESIYDERQEQAS
EESGIPPTGPHMTRSYEDKQILEDAASLIIHHVKRQAGIQKEDKYKIKQVIYHFIPDLLF
AQRGELSDVEEEEEAEMELEEGDDKKHNGVASGGGEGGSPTKSKLMFSNTNAQKLRGSGE
AYNLFYVNNNWYIFLRLHQILCSRLLHIYGQAEKQIEEDCRERDWEREVLGLKRDKSDNP
AIQLRLKEPMDIEVEDYYSAFLEMVRNLLDGNMDASQYEDTLREMFTIHAYVAFTMDKLI
QSIVRQLQHIVSDEICVQVTELYLSESLNGATGGMLNTQSSRASLEGAYQRKGEQLMSDE
NCFKLMFFQDRGQVHHTIELLDTEEENSDEPAEAERWSDYVERYVNSDSTSPELREHLAQ
KPVFLPRNLRRIRKYQRGREQQEKEGKEVGGKKSVENAENLDKMECKFKLNSYKMVYVFK
SEDYMYRRTALLRAHQSHERVSKRLHQRFQAWVDKWAKEYVTHEMAANTSKWLMGEDLEG
LLPCATTCNKEILHFMSINKYRVKYGATFIAP
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcggttggatgaacaggatccagtttttgcgtctcagcagcgtcgccttgca
agcagcacggaaagcttccagcaccgtgtacttgcaccagcgccggcagtgtacgaggct
gtgtcagaaaacatgcagcccaccactggcatccagtactccatccctcaggggtaccag
gtaagccctgcagcggacaccgggaccctttggatccaggtgccaacagtggcccagagc
tccagtagccatgggcacaccccaggcacagctgtgcatagcggggggcaccaccacccc
ccaaccataccaccccacagtgggcaggtagtgcagagccacccccaggcccccacaccc
accgcccctgtgcagggccaacagcagttccagaggctcaaggttgaagatgctctgtcc
tacttggaccaggtgaagttacagtttgggagtcagccccaagtttacaatgacttcctt
gacataatgaaggagtttaaatcacaaagcatcgatactccaggagtgatcagcagggtc
tctcagctcttcaagggtcacccagacctgattatgggcttcaacactttcctgcctcca
gggtataaaatagaggtgcagactaatgaccttgtgaacgttaccacaccagggcagatc
catcacatcaccccacatggcatccaggtgcaacaactgcccctaccccaaccgccacag
caccagcccccgcccccagcaccagccactcctgctgcagcacctcccgctgcccagccc
acgccagcaaaaatcagcaagccccagcagtcgccagccctgacccctacaagccagtcc
aatccgtccatccccccctacgcctccccacggtccccgccagtgcagccccacacaccg
gtcagcagtactcccgccagcgtcccaccactgcagaacaaccagcctgtggagttcaac
cacgccatcaactacgtgaacaagattaagaaccgcttccaaggccagcctgacatctac
aaagccttcctggagatactgcacacttaccagaaggaacagcgcaatgcaaaggaggca
ggtgggaattacaccccagcgctgacggagcaggaagtctacgcacaggtagctcgtctc
tttaaaaatcaggaggaccttctctcagagtttggacagttcctgccagatgccaacagc
tctgtgctgttaagtaagacgacagcagagaaggtagaagctgtgcgaaacgaccacggt
ggcactgtaaagaaacctcagctcaacaataacaaacagagacccaatcagaacggctgt
cagatccgccggcactctggaagtggtgccactcctgttaagaagaagcccaagctcctg
ggtctgaaggatcagtcgctggctgaggctagtaagcacggtgttggaacagagtcactc
ttctttgagaaggtccggaaagcgctccgcagtgcagaggcatatgagaacttcttgagg
tgccttgtaatcttcaaccaggaagttatctcccgggccgagctggtgcagttggtgtca
ccgtttttagggaagttcccagaactgttcacctggttcaagaatttcctggggtacaaa
gagtcatcccatatcgagagcttccccaaagaacgggcaacagagggcattgccatggag
atagactacgcatcctgtaagagactgggctccagctacagagcactccccaagagctac
cagcagcccaaatgtactggcaggaccccactgtgcaaggaggttttgaatgatacgtgg
gtgtcattcccatcctggtctgaggattccacctttgtgagctcaaagaagacccaatat
gaggaacacatttacagatgtgaggatgagagatttgagctggatgtagtcttagaaacg
aacctggccacgatgcgcgtgctggagacagtccagaagaagctctcccgaatgtctgca
gaggaacaggcgaaattccgactggacaacacactgggcggctcctctgaggtgatccac
cgcaaggccatccaaaggatatatggtgagaaggcgcctgacatcattgatgggctgaag
aagaacccagccgtgtccgtccccattgtactgaagaggttaaaaacaaaggaagaggag
tggagggaagcccagcgaggtttcaataagatctggagggaactgaatgagaaatattac
ctgaaatccctggaccaccaggggattaacttcaaacagaatgacaccaaggtgctgcgc
tccaagacgctgctcaatgaaatcgagagtatctatgatgagcggcaagagcaagcatca
gaggagagtggcattccgccgacgggacctcacatgacacgatcttacgaagacaaacag
atcctggaggatgccgcctccctcattatccatcacgtcaagaggcaggccggcatccag
aaagaggacaaatacaagatcaagcaggtcatctaccacttcatcccagacttgctgttt
gcacagcgaggggagctctctgacgtggaggaggaagaagaggcagagatggagctggag
gaaggcgacgacaagaagcacaacggggtggcgtcaggagggggagaaggggggagcccc
accaagtccaagctcatgttcagcaacactaacgctcagaagcttcggggctcgggagag
gcctacaaccttttctatgtcaacaacaactggtacatttttctgcggctgcaccagatc
ctgtgctccaggctgctgcacatctacgggcaggcagagaagcagattgaggaagactgc
cgtgagagggactgggaaagggaggtgcttggtctcaaacgggataagagcgacaaccct
gccatccagctcagactcaaggagcccatggatattgaagtggaggattattactctgcg
ttcctggagatggtgagaaacttgctggatgggaacatggatgcgtctcagtatgaggat
actctgcgggagatgttcacgatccatgcttacgtagcattcaccatggataagctcatc
cagagcatcgtcagacagctccagcatatagtaagtgatgagatctgtgtacaggtgacc
gaactatacctctcggagagtttaaatggtgccacagggggtatgctgaacacgcagtca
tccagagctagcttagagggggcctaccagcgcaaaggagagcagctcatgtctgatgag
aactgtttcaagctgatgtttttccaggacagagggcaggtgcatcacaccatcgagcta
ctggacacggaggaggagaactccgacgagcctgcagaggctgagcgctggtcagattat
gtagagcgatatgtgaactccgactctacctccccagagctgcgagaacatctagcacag
aagcctgtgtttctcccaaggaacctgcgacggatacgaaagtatcagagaggacgggag
caacaggagaaagagggcaaggaagtaggtgggaaaaagtcagtggagaatgcagagaat
ctggacaagatggagtgcaagttcaagctcaattcatacaagatggtgtatgtgttcaaa
tcagaggattacatgtacaggaggacagcgctgctcagggctcaccagtcccacgaaagg
gtcagcaagaggctgcaccagcgttttcaggcctgggtggacaagtgggcaaaggagtat
gtgacccacgagatggcagccaacaccagcaagtggctgatgggagaagacctggagggg
ctgctgccttgtgcgaccacttgcaataaggaaatcctgcacttcatgagcattaacaaa
taccgcgttaagtacggcgcaacattcatagcaccgtaa
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