Polyodon spathula (Mississippi paddlefish): 121298954
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Entry
121298954 CDS
T07273
Name
(RefSeq) neogenin-like isoform X1
KO
K06766
neogenin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04350
TGF-beta signaling pathway
pspa04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121298954
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
121298954
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121298954
Cell adhesion molecules [BR:
pspa04515
]
Immunoglobulin superfamily
DCC/UNC5 family
121298954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
Ig_2
ig
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
Fn3_VIN3
V-set
Interfer-bind
Ig_Rha78A_N
Tissue_fac
C2-set_2
fn3_2
Sp38
NSP2_assoc
EphA2_TM
Herpes_UL74
TMEM154
Motif
Other DBs
NCBI-GeneID:
121298954
NCBI-ProteinID:
XP_041082257
LinkDB
All DBs
Position
24:6785822..6964221
Genome browser
AA seq
1478 aa
AA seq
DB search
MAEWGARLLLSLSCITFLSSATVARQSDKASGQRQFTPFWFSVEPVDTLAVRSSPVFLNC
SAHSEPPARVEWKKDGTFLNLASDDRRQLLPDGSLLIPSVVHSKHSKPDEGFYQCVATID
SLGTIISRAARLTVAGLPRFSSQPGASSVTQGDSVVLNCDVNVDLVPFTRWELDQEPLDL
DERVFKLPNGTLVISNASEADAGLYRCVVENVGPVKTSDEAELQVLPDTGTERRLQFLSQ
PAPVTKARGQDVLLPCVVSGSPAPTVRWMIGDKVIDESEARFKVVGGGSLHVMNLTEEDA
GIYSCLADNGNETIEAQAELTIQAPPQFLKRPSNIYAYESMDIVFECEVTGTPAPTVKWV
KNGDVVIPSDYFKIIKEHNLQVLGLVKSDEGFYQCMAENDVGNIQASAQLIILEHDVAIP
TPPPTSLTSATTDNVAPAGSPGPTPSAPRDVVASLVSTRFIKLTWRPPAEPHGDNINYSV
YYSQEGATRERIENTSRPGELQVTIQNLMPETKYVFRVVAHNRNGPGESSSPLKVATQLE
VQVPGPAPNLRALATSPTSITVSWEMPLSGKGEIQNYKLYYMEKGLGNEQDVDVGGLSYT
INGLKKYTDYNFRVVAYNKHGLGVSTEDVVARTFSDVPSAPPQNLTLEVRNSKSIMVQWQ
PPPPGTHNGQLTGYKIRYRKGARKSEAAETTGGTQLFQLIDGLERGTEYTFRVAAITANG
TGPATDWLTAETFESDLDESRVPDIPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYG
IGSPHAQTIKVDYKQRYYTIENLDPSSHYVLTLKAFNNVGEGIPVYESAATRPLSDPEVV
LYELFNAPYTPVPDPSPMLPPVGVQASVLSHDTIKVTWADNSLPKNQKITDARYYTVRWK
TNIPANTKYKTANTTNLNYMVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTLETIPNS
PPKDVTVVSKEGRPRTIIINWQPPSEANGKITGYIIYYSTDVNAEVHDWVIEPVVGNRLT
HQIQDLTLDTSYYFKIQARNSKGMGPMSEAVQFRTPKAESSDKMANDQASGPVKPGGRNT
IPHREFGSVGRPSHSGSPTPTLDNNMLLIIIVSVGAFTIIVVVIVAALCTRRTNSQQKKK
RAACKSANGSHKYKVNSKDLKPPDLWIHHERLELKPIDKSPEPNPVMTETPIPHTSQDIP
PVDTAVDSSILQRRNSYRGHESEDSMSTLAGRRGMRPRMMMPFDAQPPQPVISAHPIHSL
DNPHHHYHCGSLASPAHSYLHHQLNPRPLANSISHIDRANSSESVRNTPGADPVPVASQA
ACSVEHMEPEASFLSSVPEEEPSRNPPTAHVRPSHPLKSFAVPAVPPAATFESPALPSTP
LLTQTGTTPQMHSVKTASIGTLGRTRSPMPVTVPSAPDVPETSSMLEDPESVSTAMLQCC
KPLPGSDSVCPLPVFILTTVAHPMPCEVVLFGTHPCFV
NT seq
4437 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtggggagcacggttgctcctctctctttcgtgtatcacctttctttcttcg
gctaccgtggccaggcagtcagacaaagcgtcaggccagagacagttcacccccttctgg
ttctcggtggagcctgtcgacacgctggctgtgcgcagctcccctgtcttcttgaactgc
tcggcccacagcgagcccccggcacgggtggagtggaagaaggacggcacctttctgaac
ctggcctctgatgaccgacgccagctgctacccgacggctccctgctcatccccagcgtg
gtgcactccaaacacagcaagccagatgagggcttctatcagtgcgtggccaccatcgac
agcctgggcaccatcattagcagggctgcacgcctcacagtcgcaggtcttccaaggttt
agcagccagccaggagcttcttcagtaacccagggtgacagtgtggttctgaactgtgac
gtcaatgtggacctggtgcccttcactcgctgggagctggaccaggagcccctggacctc
gatgagagggtgttcaagctgcctaacggcaccctggtcatcagcaacgcctcggaggcc
gacgccggactgtaccgctgcgtggtggaaaacgttggacctgtgaaaaccagcgatgag
gctgaacttcaggttctaccagacacaggcacagagaggaggctgcagttcctgagtcaa
cccgccccagtgacgaaggctagggggcaggacgtgcttctgccatgtgtggtgtcgggg
tcccctgcacccacagttcggtggatgattggagacaaggtcatcgatgaaagtgaggcc
aggtttaaggtggtaggaggcgggagtctgcatgtgatgaacctcacagaggaggatgct
gggatatacagctgcctggcggacaacggcaacgaaaccattgaggcgcaggcagaactg
acaatccaagctcctccacagttcctcaagaggccgagtaatatctacgcctatgagtcc
atggacatcgtgtttgagtgtgaggtaaccggcacgcccgctcccaccgtcaagtgggtc
aaaaacggggacgtggtcattcccagcgactacttcaaaatcattaaagaacataacctg
caggttttagggctggtgaagtcggacgaaggtttctaccagtgcatggctgaaaatgac
gtggggaatatacaggccagcgctcagcttatcatactggaacatgatgttgccattcca
acaccccctcccacctcactgacaagtgccactactgacaatgtagcaccagcgggcagc
cccggacccaccccctcggccccccgggatgtggtggcatcgctggtatccacgcgcttc
atcaagctcacctggcgcccgcccgcggagccacacggagacaacatcaactactctgtc
tactacagccaggagggcgccaccagggagcggattgagaacaccagccggccaggagag
ctgcaggtgaccatccagaacctcatgcctgaaaccaagtacgtgttccgagtggtggca
cacaacaggaacggacctggagagagctcctcccctctcaaggtggccacgcagcttgaa
gtccaggtccctggtcctgcccctaatctgcgagcactcgccacatctccaacctccatc
actgtgagctgggagatgcccctgtcaggcaagggagagatccagaactacaagctgtac
tacatggagaagggactggggaacgagcaggatgtagatgtaggaggactttcctatacc
ataaacgggctgaagaaatacacagactacaacttcagagtggtggcatataacaaacat
ggacttggtgtgtccacagaagacgtagtggccaggactttttcggatgttcccagtgct
cctcctcaaaacttaacactggaagtgcgcaattccaagagcatcatggtccagtggcag
cccccacctcctggcacacacaatgggcagctcacaggctacaagatccgctatcggaaa
ggggcgcggaagagcgaggcggcagagaccacgggtggcacacagctcttccagcttata
gacggtctggagcgtggcacagagtatacctttcgtgtggctgccattactgcaaatgga
actggcccagccacggactggcttactgcagagacatttgagagcgatctggatgagagc
cgagtgccggacatccccagctctctgcatgtccggccgctggtcaccagcatcgtggtc
agctggacaccaccggagaaccagaacatcgtggtccggggctacgccatcggctacggc
ataggcagcccccacgctcagaccatcaaggtggactacaagcagcgctactacaccata
gagaacctggacccaagttcccactatgttctgacactcaaagccttcaacaatgttgga
gaggggatcccagtgtatgagagtgcagccaccaggccgttgtcagaccctgaggttgtt
ttatatgaacttttcaatgctccatacactccagtaccagacccttcccccatgctgcca
cccgtgggagtgcaggcgtcagtcctgagccacgacaccatcaaggtaacctgggccgac
aactccctgcccaagaaccagaagataaccgacgctcgctactacacggtgcgctggaag
accaacatccctgccaacaccaagtacaagactgcaaacacaacaaaccttaactacatg
gtgacaggactgaagcccaataccctgtatgagttttcagttatggttactaaaggccgt
cgatccagcacctggagcatgacggcgcatgggactacccttgagacaattccgaactct
cccccaaaagacgtgacggtggtgagcaaggaagggagacctcgaaccatcatcatcaac
tggcagcctccgtccgaagccaacggcaagatcacaggctacatcatctattacagcacg
gatgtgaacgctgaagttcatgactgggtcattgagccggtggtggggaacagactcact
caccagattcaggatttaacccttgatacatcgtattacttcaaaatccaggcacggaat
tctaaaggaatgggacccatgtcggaggcggtgcagttcaggactcccaaagctgaatct
tctgacaaaatggctaatgaccaagcttctggaccagttaaaccaggtggtcgcaacaca
ataccacacagggagttcggctccgttgggagacccagccactcagggagcccgaccccc
actctggataacaacatgctgttgattataatcgtgtctgtgggcgccttcaccatcatc
gtcgtggtgatcgtggctgccctctgtacccggcgcaccaactcccagcagaagaagaag
agggcagcctgtaaatcagcgaacggctctcacaagtacaaggtcaactcgaaggacctg
aaaccaccagacctgtggatccaccacgagaggctggagctgaagcccatcgacaagtcg
ccagagcccaaccctgtcatgacggagacgccgatcccccacacctctcaggacatccct
cccgtggataccgccgtggacagcagcatcctccaacgacgcaactcgtaccgcgggcat
gaatctgaggacagcatgtccacactagcagggcggcgggggatgagacccagaatgatg
atgccttttgacgcccagcccccacagcctgtgattagtgctcatcccatccattccctc
gataaccctcaccaccattatcactgcggcagcctggcctccccggcacacagctatctc
caccatcagctcaacccacggccgctcgccaattccatctcccacatagacagggccaac
tcctcagagtcggtgaggaacactcctggcgctgaccctgtgccggtggcgagtcaggct
gcctgcagtgtggagcacatggagcccgaagctagcttcctgagcagcgtccctgaggag
gagcccagccgcaacccgcccaccgcacacgtgcgcccctcccacccgctcaagagcttc
gctgtgcctgcggtgccccccgccgccaccttcgagtcccccgcactgcccagcaccccc
ctgctcactcagacagggaccacaccccagatgcactctgtgaaaacagcctccatcggg
accctgggaaggacccgttctcccatgccagtcacagtgcccagcgcacccgacgtaccc
gagaccagcagcatgctggaggatccagagagtgtaagtacagcaatgcttcagtgctgc
aagcctctccctggctcagattcagtctgtcccctccctgtattcatactcactacggtg
gcacatccaatgccctgtgaagtggtactctttgggacccacccctgttttgtttaa
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