Polyodon spathula (Mississippi paddlefish): 121298968
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Entry
121298968 CDS
T07273
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 8-like isoform X1
KO
K11839
ubiquitin carboxyl-terminal hydrolase 8 [EC:
3.4.19.12
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04137
Mitophagy - animal
pspa04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121298968
04137 Mitophagy - animal
121298968
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pspa01002
]
121298968
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121298968
04121 Ubiquitin system [BR:
pspa04121
]
121298968
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
121298968
Peptidases and inhibitors [BR:
pspa01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
121298968
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Others
Others
121298968
Ubiquitin system [BR:
pspa04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
121298968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
USP8_dimer
WW_USP8
UCH_1
Rhodanese
Motif
Other DBs
NCBI-GeneID:
121298968
NCBI-ProteinID:
XP_041082302
LinkDB
All DBs
Position
24:8982965..8996802
Genome browser
AA seq
1079 aa
AA seq
DB search
MPGVSSGVKELYLSSSLGELNKKAEIRADKTNTRSYVQSACKIFKTAEECRLDRDEEKAY
VLYMKYLSVYDLIKKRPDFKQQQEYYLSILGPTSFKKAIEEAEKLSDSLKLRYEEAEVRK
RLEERERQEEKKKQEKSRSEEKDLGKSALKDLADFKKENKKIKGEPINAKKVKSDTPKVT
VPPGGITAEKLFKMLQDPSINVIVMDARSQNDYQESRMQVSTQNCISVPEEAVSPGITVN
QIEAKLPEESKGQWKRRGFVDYIIMFDWFSSVKDLKLGTTLQSLKDALFKWDSQTILRSE
PFVLEGGYESWLLCYPMYTTNAKVALPRQERTQTIPVSLNFSYPSLEEPPAPVTPEPEPE
PEPEPSLELNGMKRSVEAELPKEDVDETSRIITKQTPWSPASATKPVIVSARQPAVTVVP
QFDRTKKPSVKIPDSSRPNQEATGKDQQTVPNGPVIPDRSIKPSFDKKNQEEQLREQERQ
ELERRVKEEEEEERKWSDKMQEEKEKEEKERKLKEAAERLDAEKAEQDKEHTGDAQEKSS
QESSPDITAIDENKVPLKHSNEVENGSQETRFIKDNNEDDIEKPKPQREPLTRARNEEMG
RSVPGLPHGWMKFLDTVTGTYRYYHSPTNMVHLYLPEMSISATPPDTPPTAKLKQSPQAE
LDREQSKLKRSYSSPDITQAIQEESKKKAPVIPTVNRETKPPSLTDYTKTEIVVRPSAAK
IRNLNPVFGGLGPALTGLRNLGNTCYMNSILQCLCNTPRMAEYFHRNYYQDDINRSNFLG
HKGEVADEFGVIMKALWSGQYKFISARDFKITIGKINDQFAGYEQQDSQELLLFLMDGLH
EDLNKRADNRKRYKEETIDHQDDNKAADLAWEKHKRLNESIIVALFQGQFKSTVQCLTCH
RKSRTFEAFMYLSLPLASSNKCTLQDCLKLFSKEEKLTDNNRFFCSHCKTHRDSTKKIEI
WKLPPILLVHLKRFSYEGRWKQKLQTSVDFPLENLSMSQYVIGPKNNLKNYHLYGVSNHY
GGLDGGHYTAYCKNAIKQRWYKFDDSDVSELSASSVKSSAAYIFFYSSLDHRVPEMAAY
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgccaggggtgtcgtctggtgtgaaggagctgtacctctcctcctctttgggtgagcta
aacaagaaggctgagattagagcagacaaaaccaatacaagaagctatgttcagagcgca
tgtaaaatctttaagacggcagaagagtgtcgtttagacagagatgaagaaaaggcatat
gtcctgtatatgaagtatctgtctgtctatgaccttattaaaaaacgaccagacttcaag
caacagcaggaatattacctctctatccttggaccaacaagctttaaaaaggctatcgaa
gaagcagagaagctgtcagatagtcttaagctcaggtatgaggaagccgaagtgcgcaaa
aggcttgaagaaagagaaaggcaagaagaaaagaaaaagcaggaaaaatccagaagtgag
gaaaaggacttgggaaagagtgccttgaaggacttggcagatttcaagaaagaaaataag
aagataaaaggggagccaataaatgcaaagaaggtaaaaagtgatacacctaaagttact
gtgcccccaggaggaatcacagctgaaaaactcttcaaaatgctgcaggatccaagcatc
aatgtcattgtcatggatgcaaggagtcaaaatgattaccaagagtcacgaatgcaagtg
tctacccagaactgcatcagcgttcctgaagaggctgtcagtcctggaataactgtaaac
cagattgaggccaagttgccagaggaatccaaagggcagtggaagcggcgggggtttgtg
gattacatcattatgttcgactggttcagctctgtgaaggatctgaagctagggacaact
ctgcagagcctaaaagacgccctgtttaagtgggacagtcagactatcttacggagtgag
cccttcgtcttagaaggaggttatgaaagctggcttttgtgttatcccatgtatacaacc
aatgctaaagtcgcgctgcccagacaagaaaggactcaaacaatccctgtgtctttgaat
ttcagctatccatccttagaggagcctcctgcccctgtcaccccagaaccagagcctgag
cctgagccagagccctctctggagctgaatggaatgaaaaggtctgtcgaagcagagctt
ccgaaggaagacgtggatgagacctcaagaataatcactaagcagactccatggtctcct
gcttctgctactaaacctgtgatcgtgtccgccaggcagcctgcagtgacggttgttcct
cagtttgatcgcacaaaaaagccatctgttaaaataccagacagttccagaccaaaccaa
gaagccacaggcaaggaccaacagacagttccaaatggaccagtcattccagaccgttca
ataaagccatcgttcgacaagaagaaccaggaggagcagctgagggagcaagagaggcaa
gagctggagcgaagagtgaaggaagaagaggaggaggagaggaagtggagtgacaaaatg
caggaggagaaagagaaggaagaaaaagagcgcaaactcaaagaagcggcggaaaggctt
gatgcagaaaaggcagagcaggacaaggagcacactggagacgctcaggaaaagagctct
caagaatcatctcctgatattacagccattgatgagaacaaagttcctttgaaacatagt
aatgaagtagagaatgggagccaagagacaagatttataaaagataataatgaagatgac
attgaaaaaccgaagccacagcgagagccattaacacgagcaagaaatgaggagatgggg
cgaagtgtcccgggactgccacatgggtggatgaagtttttggacacggtgactggtact
taccgttactaccattcaccaacaaacatggtccacttgtacctgcctgagatgagtata
tctgcgactccacctgatactccccccaccgccaagctaaagcagtccccccaggcagag
ctggaccgggagcagtctaagctgaaacgctcctactcatcccctgacatcacccaggcc
attcaggaggagagcaagaagaaagcccctgtgatacccaccgtcaaccgggaaaccaag
ccccctagcctcactgactacactaaaactgaaattgttgtgcgaccctcagcagccaag
atccgtaacctgaaccctgtgttcggaggccttgggccagctctcaccgggcttcgaaat
ctcggcaatacctgctacatgaactccatcctgcagtgtctgtgcaacacgccccgcatg
gctgagtacttccacaggaactattatcaagacgatattaacagatccaattttctgggg
cataaaggtgaggtagcggatgaatttggggtaataatgaaggcactgtggtcagggcag
tacaaattcataagtgctcgagatttcaaaatcaccattgggaagatcaacgaccagttt
gctggctatgaacagcaggattcccaggagctgttgcttttcctgatggatgggctccat
gaagatctaaataaaagagctgacaataggaagaggtacaaagaagaaaccattgaccac
caggacgataataaagcagcagaccttgcttgggaaaaacacaagaggctcaacgagtcc
atcattgtcgctctgttccaaggccagttcaaatccacagtgcagtgtctgacttgccac
agaaaatcaaggaccttcgaagctttcatgtatttgtcattgccactagcatcctcaaac
aagtgtacactacaggactgcctgaagttattctccaaagaggagaagctgacagacaat
aacagattcttttgcagtcactgcaaaactcacagagattcaacaaagaaaatagaaatc
tggaaactcccacctattctgttagtgcatttaaaacgattttcatatgaaggacggtgg
aaacagaagctccagacttctgtagactttcccttggaaaacttgagcatgtcccagtac
gtaattggcccaaagaataacttgaaaaattatcacctctatggagtatctaaccattat
ggaggcttggatggagggcactacactgcctactgcaagaatgccataaagcaacggtgg
tacaagtttgatgacagtgacgtgtcagaactttctgcatcttcagtaaagtcctcggct
gcttatatcttcttctactcctcactggaccacagagtacctgaaatggctgcatattaa
DBGET
integrated database retrieval system
