Polyodon spathula (Mississippi paddlefish): 121299011
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Entry
121299011 CDS
T07273
Name
(RefSeq) TBC1 domain family member 2B-like
KO
K20166
TBC1 domain family member 2B
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121299011
Membrane trafficking [BR:
pspa04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
121299011
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
RabGap-TBC_2
PH
TMF_DNA_bd
PH_8
DUF7491
HALZ
PH_11
PH_6
Tropomyosin
TMF_TATA_bd
Fib_alpha
DivIC
Motif
Other DBs
NCBI-GeneID:
121299011
NCBI-ProteinID:
XP_041082374
LinkDB
All DBs
Position
24:complement(7497458..7528529)
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AA seq
938 aa
AA seq
DB search
MHGGDGSEISPARNPRVTPVRSLDVTDSESSKDQPAKLCGFLYKLAGKGPLRGFKSRWFV
YDPRKCYLYYFKTPQDSLPLGHIEIADACFSYEVDAGDEGQFEIHTSGNDFILKAPNRQV
MRYWLQQLQQKRWEFCNARGTARDSWNSPTLPDLPTGLVAKDTDAFSFEKPSDSTESVRN
EFAMEIAPEGHVGVNTARNPAAQPSTINFSLKQWGTELRNSMSHLRAGKGSSENRRSVFY
TSSEEWEMIDPTSKDFQDLATQEYTRKSQLEGNRVSLGSAFTFDFSRNSSRPKRPFLRDM
IGPSKNRSSNEASPVECIVSNGNKASESQLKIQSLQEELTRLKEEHTSQKELVRLLQQTL
RGSQYDKRSSSTQPGAAPDGMELVREKDQQIQALSAYIEKLRLEKESLHQEVKSLKNKVG
ELNEQLGMLMETIQAKDEVIIKTSSSHTEESSVPSRDLQELDRLKDSLQGYTTQNKFLNK
EILELTALRRNAVAREKALEAKCTGLEAKLCQIESKYLVLLQEVKNPVCSGEQGPAREVI
SRLLEDALEVETPEHPEHTILKPHAVSEFDVFGFKTMPEDDEEEQLVAKVRALDLKSLSF
TDQEVSVGVKWENYFASTMNREMVRTPELKGLIRSGIPHEHRSKVWKWCVCFHVKKFRDT
VPPDYFNQLLQEALEKQNPASKQIELDLLRTLPNNKHYASPTSEGIQKLRNILLAFSWRN
PDIGYCQGLNRLAAVALLYLDQEDAFWCLVAIVEVFMPRDYYTKTLLGSQVDQRVFKDLM
SEKLPRLHAHFEQYKVDFSLITFNWFLVVFVDSVVSDILFKIWDSFLYEGPKIIFRFALA
LFKYKEEEMLKLQDSMAIFKYLRYFTHAVLDARKLMSIAFGGMNPFPLRQIQNRRTFHLE
KVRLELTELEAIRQNFLQQRDTSPEGRGLISDDEEDND
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgcatggaggtgatgggagtgagatcagtcctgcgcgaaaccccagggttacgcctgtg
aggtccctggatgtgacagacagtgaaagctccaaggaccaacccgcgaaattatgcgga
tttttgtacaagctagctgggaaggggccactaaggggtttcaaaagccgctggtttgtc
tacgatcccagaaaatgctatttgtattacttcaagactccccaagactccctacctctg
ggacatattgaaatagccgatgcctgctttagttatgaagtggacgctggcgatgaaggg
cagtttgagatccatacatctggaaatgactttatcctcaaggctcccaacagacaggtg
atgagatactggttacagcagctgcagcagaagagatgggaattctgtaacgctcgagga
acagccagggatagctggaactcccccacgctgccagaccttccaacaggactggttgcc
aaggatacagatgccttctcatttgaaaagcctagtgactccacggagagtgtccgcaat
gagtttgctatggaaattgccccagaagggcatgtgggagtcaatacagccagaaaccct
gctgcccagccttccaccatcaacttctccttgaagcagtggggcacagagttaaggaat
tcgatgtcccatctgagagcaggcaaggggagcagtgagaacaggaggagtgttttttac
acaagcagtgaggagtgggagatgattgaccccacctcgaaagactttcaggatcttgcg
acgcaggaatacacaaggaaatcccaactggagggaaacagagtttccctaggctccgcc
ttcacgtttgattttagccgcaattcttcgagaccgaagcggccgtttctaagagacatg
attggaccgagcaaaaaccggagcagcaacgaggcctccccggtggagtgtatcgtgagc
aatggcaacaaagcctctgagagccagctgaagatccagagcctgcaagaggagctgacc
agactgaaggaagagcacactagccaaaaggaactcgtccggctgcttcagcagaccttg
aggggttcccagtatgacaagaggtccagcagcactcagccgggagctgcccctgacggc
atggagctggtgagggagaaggaccagcaaatccaggctctgagcgcatacatagagaag
ctgcggctggagaaggagagcctgcaccaggaggtgaagtccctgaagaacaaagtgggg
gagctcaacgagcagctgggcatgctaatggagaccatccaggccaaagacgaggtgatc
atcaagaccagctcctcacacacagaggagtcttccgtacccagcagggacctgcaggag
ctggacaggctgaaggacagtcttcagggctacacaacacagaacaagtttctgaataaa
gagattttggagctaactgccctgaggaggaatgctgtagcaagagaaaaagccttggag
gcaaagtgcacgggtctggaagctaagctctgtcagattgagagcaagtacctggtcctg
cttcaggaagtgaagaacccagtgtgctccggggagcagggcccggcccgcgaggtcatc
tccaggttactggaggacgcgctggaggtggaaactcctgaacacccagaacacactata
ctcaaaccacacgctgtcagtgagtttgacgtctttggcttcaagactatgccggaggat
gacgaggaagagcagctggtagccaaggtgagagccctggacctcaagtctctctccttc
actgaccaggaggtctctgtgggggtcaaatgggagaactactttgccagcaccatgaac
agggagatggtgcgcacccccgagctcaagggcttgattcgcagtggcattcctcacgag
caccgctccaaagtgtggaagtggtgtgtttgcttccacgtcaagaagtttcgggacact
gtccccccagactattttaaccagctgctgcaggaagcccttgaaaaacagaacccggcg
tccaagcagatcgagctggacctcctgcggacattacccaacaataagcactacgcttca
cccacctcggagggcatccagaaactccgcaatatccttctggcgttttcctggagaaac
cccgatattggatattgccaaggtcttaatcggttggcagctgtagcgcttctctattta
gatcaggaggatgcgttctggtgcctggttgccattgtggaggtttttatgccacgagac
tattacaccaagacgctgctaggatcgcaggttgaccagcgagtgtttaaggatctgatg
agtgagaagctcccccgtctgcatgcccactttgagcagtacaaggtggatttctctctc
atcacctttaactggttcctggtggtgtttgtggacagtgtggtcagtgacatcctcttt
aagatatgggactcctttctatacgagggaccaaagatcatatttcgttttgcattggcg
ctgttcaagtacaaagaggaggagatgttaaagctgcaagattccatggctatcttcaag
tacctgcggtacttcactcatgctgtactggacgcaagaaagctgatgtccattgcgttt
gggggcatgaatccattccctctgcgtcagattcagaaccgcaggaccttccatctggag
aaggtgcgtctggagctaacagagctggaagccatccggcaaaacttcctgcagcagcgc
gacaccagcccggaggggagggggcttatcagcgacgacgaagaggacaatgactag
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