Polyodon spathula (Mississippi paddlefish): 121299036
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Entry
121299036 CDS
T07273
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121299036 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pspa03310
]
121299036 (roraa)
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121299036 (roraa)
Nuclear receptors [BR:
pspa03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
121299036 (roraa)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
BORCS6
Motif
Other DBs
NCBI-GeneID:
121299036
NCBI-ProteinID:
XP_041082435
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Position
24:8358385..8613206
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AA seq
519 aa
AA seq
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MESTPDPTSDPGNSASEPATPLRDTPVNLETLRKAEHPVPVRRQSCSSTNRGITGTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNR
CQHCRLQKCLTVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTP
TYNLSTNGLTELHDDLSSYIDGHTPDGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFTAGSGFFPYCSFTNGDTSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQTFL
QEEMENYQNKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
LVRMCRAFDSQNNTVYFDGKYAGPEVFKALGCDDLISSVFEFGKNLCSLHLSEDEIALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRAHFPPLYKELFSSEFEQPMPIDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtctactccagatccaacaagcgatccgggcaacagcgcctcagagccagctacc
ccgctcagggacaccccggtaaacctggagactctccgaaaagctgaacatccagtcccc
gttcgaaggcagagctgctcgagtaccaacagaggtattacaggaacaaagaagacacac
acttctcaaatcgaaattattccgtgcaagatctgtggagataaatcatcaggaatccat
tatggggttataacttgtgaaggctgcaagggcttcttcaggcgaagtcagcagagcaac
gccacatactcctgtcctcgtcagaagaactgtctgatcgaccgaaccagccgcaaccgt
tgccagcactgccggctgcagaagtgtctcactgtcggaatgtcacgagatgccgtcaag
tttggcagaatgtctaagaaacaacgagacagcctgtatgcggaagtgcagaaacaccga
atgcaacagcagcagcgggatcatcaacagcagcccggagaggctgagccactcacgccc
acctacaacctctccaccaatgggctgacagagctgcacgatgacctcagcagctacatt
gacggccacacccccgacggcagcaaagcggactctgcagtcagcagcttctacctggat
atccagccttcacctgaccagtctggcctggatatcaacgggatcaaaccagaacccatc
tgtgacttcaccgcaggttccggtttctttccgtactgctcgttcacgaatggggacacc
tctcccacagtgtcaatggcagagctagaacatttggcacagaatatctctaagtcacac
atggaaacgtgtcagtacttgagagaggaactacaacaaatgacctggcagacattcctg
caggaagaaatggagaactaccagaacaagccccgggaggtcatgtggcagctgtgtgca
atcaaaatcacagaagctatccagtatgtggtggagtttgccaaacgcattgatggcttc
atggagctgtgtcagaatgatcaaatagtgcttcttaaagctggttcgttggaagttgtg
ctggtcagaatgtgccgtgcctttgactctcagaacaacacagtgtattttgatggaaag
tatgctggtccagaagttttcaaagcattaggctgtgatgacttgatcagctctgtcttt
gagtttggaaaaaacttgtgttctttgcatctgtctgaagacgagattgcgttgttttct
gcgtttgtgttgatgtctgcagatcgatcctggcttcaagaaaaggtaaaggtggagaag
cttcagcagaaaatccagctggctcttcaacacgtcctgcagaagaaccacagagaggat
ggaatactgacaaagttgatatgcaaagtgtcaacactgcgagcactgtgcagcagacat
acagagaagttgactgcgttcaaagcaatatacccggacattgtgcgtgcccatttccct
cctttatacaaggagctcttcagttcagagtttgagcagccaatgcccattgatgggtaa
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