Polyodon spathula (Mississippi paddlefish): 121299064
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Entry
121299064 CDS
T07273
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 2-like
KO
K20091
chromodomain-helicase-DNA-binding protein 2 [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121299064
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121299064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
ResIII
HDA2-3
DEAD
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
121299064
NCBI-ProteinID:
XP_041082500
LinkDB
All DBs
Position
24:15983383..16011241
Genome browser
AA seq
1803 aa
AA seq
DB search
MIKNKNKKHEEDGATQSNASSNSASEESNHSGSESGSQSESQHGREKGNDHASEFNSSSE
SESQSDSESESAGSKSQQNSSEVKDKPVSRKDRLADVKKMWEEHPDVYGVRRSNRSRQEP
ARLNFGAQGSSDSESESPKRRGVRQKKKKNIWKGDDSNDEDDDDDDEEDEEDASSAESEQ
EEKKVRSQRPTAKRTQTKATVKKQKPQRKRKKQDSSDEDDDDDDDDTPKRQTRRQVAKNV
SYKEDEDDFETDSDDLIEMAGEGAEEQQDDSETIEKVIDVRIGKKGATGASSTVYAVEAN
GDPCADFDPEKDEGEVQYLIKWKGWSYIHSTWESIESLTQQKVKGLKKQENFKKKNDEVK
YWMSKASPEDIEYYNCQQELTTDLNKQYQIVERVIAMKTGKSSQGHSDFPSHSHKTSSNE
PEYLCKWMGLPYAECSWEDGALIGKKFQHCIDSFHNRNNSKCIPFKDCKVLKQRPRFVTL
KKQPAYVGGDNLELRDYQLDGLNWLAHSWCRCNSVILADEMGLGKTIQTISFASYLFHQH
QLYGPFLVVVPLSTLTSWQREFETWAPDMNVVVYLGDVMSRNTIRDYEWVHSQTKRIKFN
ALLTTYEILLKDKAVLGSINWAFLAVDEAHRLKNDDSLLYKTLIDFRSNHRLLITGTPLQ
NSLKELWSLLHFLMPEKFEFWEDFEEEHGKGRDNGYQSLHKVLEPFLLRRVKKDVEKSLP
AKVEQILRVEMSAQQKQYYKWILTRNYRALSKGTRGSTSGFLNIVMELKKCCNHSYLIKQ
QEENETESQSERLQNLIRSSGKLVLLDKLLTRLRERGNRVLIFSQMVRMLDIIAEYLVIK
HYPFQRLDGSVKGEIRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWN
PQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTV
LDNGSGTSNSNPFNKEELTAILKFGAEDLFKEAEGEESEPQELDIDEILRLAETRESESS
VSATDELLSQFKVANFSTMEESVPELEERHPRDWDDIIPEDQRRKIEEEEKQREMEDVYM
LPRSRSSNKKAQANDSDSDVGSKLKQQRSSGSESETDDSDDDKKPKRKGRPRTRKNNVEG
FTDAEIRRFIKAYKKFGAPLDRLEAIARDAELVDKSVADLKRLGELIHSSCVAAVQEHEE
HLKENPSEVKGPGKRRGITIKISGVQVNAKSIIQHEEEFGPFHKAIPVDLEERKKFQLTC
RVKASHFDVEWGIEDDAQLLLGVYEYGYGNWDLIKTDPDLTLGSKILPDDPQKKPQAKQL
QSRVDYLIKLLKKELENKNLQGAETKVKRRKPRVKKENKAPKDEHGNDISSPRLSDNPSE
EGEVKDDGTEKSPAKKKQKKKDNKENKEKQGAPKKDKDGEKEKKKSKPKKEKTKSASKGK
KSQGPVHITAGSEPVPIGEEDDELDQETFSVCKERMRPVKKALKQLDKPDEGLSVQEQLQ
HTRTCLLKIGDRITECLKAYTDTEQVKTWRRNLWIFVSKFTEFDARKLHKLYKMAQKKRS
QEEEKGHKKEEDTSGSKKPFLTEPSGSSRESMGSQTPQKPHLPLSHPTQHHRDNYSQPNK
RHFNNADRGDWPRDRKYSYPGNSNQPWAGDRHHQYDQHRYKEHHYNDRRPHGEPYRSSNY
RSSGSPRKRQYDQYSNDREHRRSRDYYERHQDPKRRRVDDFRSQTYHQGGSHPQDFRRMP
DHRSQMGNHSQGASEHHRTFHPEKPGNYKPLPLATPVLMDPRSPQSQKSPHDSRSPSRQV
SGI
NT seq
5412 nt
NT seq
+upstream
nt +downstream
nt
atgattaagaataagaacaaaaaacacgaagaggacggcgcaacccaaagcaatgcatca
agcaattctgcttctgaagagtcgaaccactccggctctgagtcggggagccagtctgag
agtcagcatggaagagagaaaggcaacgatcatgccagtgaattcaacagcagctctgaa
tctgaaagccagtctgattcagagtccgaatcggcgggatcaaaatcccagcaaaattcc
tcggaggtcaaagataaaccagtcagcaggaaggatagattagcagatgttaagaagatg
tgggaagaacatcctgatgtttatggggtcaggcggtcgaaccggagcagacaagagcct
gctcgtcttaattttggagctcagggcagcagtgactctgaaagtgaaagtccaaaaaga
agaggagtaagacaaaagaagaaaaaaaatatctggaaaggtgatgactctaatgatgaa
gacgacgacgatgatgatgaagaggatgaggaggatgccagcagtgcagagagtgagcag
gaagagaagaaagttagatcacaacgacctacagccaaaagaacacagaccaaagccact
gtcaaaaaacaaaaacctcagcggaaacggaaaaaacaagactcttcagacgaagatgac
gatgacgatgatgacgatacccccaagagacaaacaaggcgtcaggttgccaaaaatgtc
agttacaaggaggacgaggatgactttgagactgactccgacgacctcatcgaaatggca
ggggagggagcagaagagcagcaggatgacagtgagaccattgaaaaagtgatagatgtc
aggattgggaaaaaaggagccactggtgcttcaagcactgtgtatgctgtagaagccaac
ggagacccctgtgctgactttgacccggagaaggatgagggggaagttcagtaccttata
aaatggaaaggctggtcctatatccacagcacctgggagagcatagagtcattgacacag
cagaaagtgaaggggctaaagaagcaggagaattttaagaaaaagaatgacgaagtaaaa
tattggatgtccaaagcatcacctgaagatatagagtattataactgccagcaagagctg
accactgacctgaataagcagtatcagattgttgagagagtgatagctatgaagacagga
aagtcatcgcaaggccactctgactttccctctcacagtcacaagacttcctccaatgag
ccagaatacctgtgcaaatggatggggcttccttatgctgagtgtagctgggaagatgga
gcattgattggaaagaaatttcagcactgtatagacagcttccataacagaaacaactct
aaatgcatccctttcaaagactgcaaagtactaaaacagaggccaaggtttgtgacattg
aagaagcagccagcatatgtagggggagacaatctggagctcagagattaccagttagat
ggacttaactggctagcgcattcctggtgcaggtgtaatagtgtgatcttggctgatgaa
atgggcttggggaagactattcagaccatctcctttgcatcctacctgttccatcagcat
cagctgtatgggcccttcctggtagtggtgcctctctcaaccctcacttcctggcagagg
gagtttgaaacgtgggcacctgatatgaacgtggtggtgtacctcggggatgtaatgagc
agaaatacaattcgtgactatgaatgggtacattctcagacgaaaagaattaaattcaac
gcacttttaactacatatgaaatcctattaaaagacaaggcagtgctgggaagtataaat
tgggccttccttgcagtggacgaagctcatagattgaagaatgatgactcgctgctgtac
aagaccctgatcgatttcaggtcaaaccaccgtctgctcatcacagggacacctctgcag
aactctctcaaggaactgtggtcactgctgcactttctcatgccagagaaatttgagttc
tgggaggattttgaagaggagcatgggaaaggtagagacaatggctatcagagcctccac
aaagttctggaaccattcctcttgcgcagagttaagaaggatgtggagaagtccctgcct
gccaaagtggaacagattctcagggtggagatgtcagcacaacagaagcagtattacaag
tggattttgacaaggaattacagggctctctccaaggggacaagaggaagcacctccggg
ttcctaaatattgtcatggagttaaagaaatgctgtaaccacagttacctgatcaaacaa
caggaggagaatgagaccgaaagccagtcagaacgtttacagaacttgatccgaagcagt
ggcaagctggtcctcctggacaagctcttgacacggttgcgagagcgggggaacagagtt
ctaatcttctcccagatggtgcggatgctggacattattgcagagtacttggtcatcaag
cactatcctttccagcgcttggatggctcagtaaaaggagaaataagaaaacaagcactc
gatcactttaatgctgaaggttctgaggacttctgtttcctgctgtccacacgagcgggt
ggcttgggcattaatctcgcctcggctgacacagtggttatctttgactctgactggaac
ccccagaacgacctgcaggcacaggccagggcacacaggattggtcagaagaagcaggta
aacatttatcgtctggtaacaaaggggacagtagaggaagaaattattgaacgagccaaa
aaaaagatggttttggaccatcttgtgatccagagaatggacactacgggacgcacggta
ttggacaatggctcaggaacctcaaattcaaatccattcaacaaggaggagctgactgca
atcttaaagttcggagcagaggaccttttcaaggaagctgaaggagaagagtctgaacct
caggaattggacattgatgaaatcttacggctggctgaaaccagagaaagtgaatcgtca
gtgagcgccactgatgaactgctgtctcaattcaaggtagctaacttctccactatggaa
gaaagtgtgcctgagttggaggagaggcaccccagggactgggatgacatcatcccagag
gatcagaggaggaagatagaggaggaggaaaagcaaagggaaatggaggacgtctacatg
ctgccgcgaagcaggagctccaacaagaaggctcaggcaaatgacagcgactcagatgtt
ggttcaaagttaaagcagcagaggtcatctgggtcagaaagtgaaacggacgacagtgac
gatgacaaaaagcctaagcgcaaggggagacctcggacacggaaaaacaatgtggagggg
ttcaccgacgcagagattcgaaggtttatcaaggcttacaaaaaatttggagcccccctt
gataggttggaagccattgcccgggatgctgagctggtggataagtctgtagctgacctg
aagcgtttgggagagctgattcacagcagctgcgtagcagcggtgcaagaacatgaggag
cacttgaaagaaaacccaagcgaggttaaaggaccaggaaaacgcaggggtattacaatc
aagatttcgggtgtccaggtcaatgccaaatccattattcagcatgaggaggagtttggg
ccatttcataaagccatacctgttgatcttgaagaaaggaaaaagtttcaattgacctgt
cgcgtgaaggcatcccatttcgatgtagagtggggcatagaggatgatgctcagttgttg
ctgggggtctatgaatatggttacggcaactgggatttaataaaaactgacccagatctc
acactgggcagtaagattcttccagatgaccctcaaaagaagcctcaagcgaaacagtta
cagtctagagtggattacctcatcaagctgctaaagaaggaacttgaaaataagaatctg
caaggggcagagaccaaagtaaagaggaggaaaccacgagtgaagaaggagaacaaggct
ccgaaggatgaacacggaaatgacatttcatctcctcggctttctgacaatccttctgag
gaaggggaggtcaaggatgatggcacggaaaagagtccagcgaagaagaaacaaaaaaag
aaggataataaagaaaataaggaaaaacagggagcacccaagaaagataaagatggggag
aaggagaaaaagaagtcaaaaccgaaaaaagaaaagactaaatctgccagtaaagggaag
aagtctcaaggccctgtccacattactgcagggagtgaaccggtccctattggagaggaa
gacgacgaactcgaccaggagacattcagcgtttgcaaggagagaatgagaccagtgaaa
aaggccctgaagcagctggataaacctgatgaaggcctgtctgttcaggagcagctccag
cacactcgcacctgcttgctgaagattggcgatcgtatcacagagtgccttaaagcctac
actgacacggagcaggtcaaaacctggaggaggaacctctggatttttgtatctaaattt
acagagtttgatgccaggaagcttcacaagctgtataagatggcacagaagaagcgatca
caagaagaggagaagggacataaaaaggaggaggacacctctggtagtaaaaagccattt
ctaacagagccctctggttccagtcgagaatccatgggctcccagacaccccagaaacca
cacttgcctctctctcatcccacacagcaccacagggacaactacagccagccaaacaag
agacattttaataatgcagatcgaggtgactggccaagagatcgcaaatacagttaccca
ggaaacagtaatcagccatgggcaggtgacaggcatcaccagtatgaccagcatcggtat
aaggaacaccattacaatgaccgtcgacctcacggtgaaccctatcggagttccaactat
cgatcaagcggctcaccccgcaagcggcagtatgaccagtacagcaacgatcgagagcac
cggagaagcagggactattacgagaggcaccaagatcccaaacggcgacgagtagatgac
ttcagatcacaaacctaccaccagggtggcagtcatccacaggacttcaggaggatgcct
gaccatagatcccagatgggcaaccatagccaaggggcatccgaacatcaccggacattc
cacccagagaaacctgggaactacaaaccccttcctctggcaactcctgtcttgatggac
ccccgttcccctcagtctcaaaaatctcctcatgactcccggtcgccctctagacaggtt
tctggaatataa
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integrated database retrieval system
