Polyodon spathula (Mississippi paddlefish): 121299073
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Entry
121299073 CDS
T07273
Name
(RefSeq) dmX-like protein 2 isoform X1
KO
K24155
rabconnectin-3a
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
121299073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121299073
Membrane trafficking [BR:
pspa04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121299073
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
121299073
RAVE complex
121299073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_HPS5
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_LRRK2
Beta-prop_DCAF12
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_WDR19_1st
TAF6_C
Beta-prop_VPS8
Beta-prop_WDR19_2nd
Motif
Other DBs
NCBI-GeneID:
121299073
NCBI-ProteinID:
XP_041082515
LinkDB
All DBs
Position
24:9670466..9705549
Genome browser
AA seq
3051 aa
AA seq
DB search
MHLHQVLTGAVNPGDGCYSVGSVNDIPFTAYGSGCDIVILASDFECVQIIPGAKHGNIQV
SCVECSHQLGRIAASYGNTVCIFEPVVTNLHKRNNQLNYQWQKTGQFFLNSMTYNLAWDP
QGNRILTATDRLQLWAPPSGDVLLEEDDGQAADDKLPPVLNDWKCVWQCKTAVSVHIMKW
SSDGEYFATAGKDDCLLKVWYPTTAWKSAVVIPDLPDRKSDAVHFSFVYLAHPRTVTGFS
WRKTSKYMPRGSVCNVLLTSCQDGVCRLWSETLLPEDSLLGGQITESSTSSSSSLPRLGN
QKDKIQHALETIHHFKHLRRGRRRSSALVAHTDLLPSQLGSHDVHRQISHHANALCHFHI
AASISPSTAIPTALAGTAFTSDEGNGGFVVHWLNNKDLSFTSAMDLFMQQLRKISEQQVE
QGCEDLDQDILQKLDPELEDVSDKGSSEHEGEQEGSTKASSPGSSASVPLPTVLLDRKME
ALVNEWNRNPDMLFTIHPVDGSFLVWHVKYLDEYIPGIFRQVQVAFSSRIPVAFPTGDAN
SLSKNIMVYACTFTEKDSSDAGQQKEKIKSVPHSASETNVLGSGTGHSVVPVISPAVMMV
SKHIDGSLNQWAVTFADKSAFSSVLTVSHKFRYCGHRFHLNDLACHTVLPLLLTSSHHNA
LLTPESENEWDAEKVKQKLQPFKPQKGFSRKQLKNAATRTFHDPNAIYSELILWRVDHIG
PLSCTGGVSELARINSLYTSAFSNVAWLPTLIPSHCLGTYCNSASACFVASDGKNLRLYQ
AVVDARKLLDELSDPEISKLVGEVFNIVSQQSTARPGCIIELDVITNQCGSTTQLLHVFQ
EDFILGYKPHDESVAYEDLESSSFQTEQGYRPPLFSETFFLVVIAKDNNRRSVLQMWHLH
LKSVQACASNTTPEQTFENKLTVPEQDNAESSPDTSPGQSPLPRSSSTANLQSASKLILS
SKLVYSQPLDLPNDVEVIRATPSAGHLSSSSIYPVCLAPYLIVTTCSDSKVRFWHCIVEI
DPSYEDPEEGRTYRWEPWSLMNEEDDSNSAVCVPGRPVAVSCSYIGRLAVAFKQLKQSNG
CISKEFSMHVSIFECESTGGSEWVLEQTIHLDDLANVGHALDPRVSVDSNLCVYSKSDLY
LNKDHHLTPNVKHFVHLDWLSKEDGSHILTVGVGSSILMYGRISGIVNEQTSSKDGVAVI
TLPLGGSIKQGIKSKWILLRSVDLVSSVDGTPSLPVSLSWVRDGILVIGMDCEMHVYAQW
KQDKKCCGETESDSLSSSENIAGQVDSRGFDTKARAMKHSVFDGPATAGDAFAAPTVLQD
GGLFEAAHSLSPTLPQYHPTQLLELMDLGKVRRAKAILSHLVKCIAGEVAIVRDAEAGEG
GARRHLSRTISVSGSTAKDTIIAGRDGVRDYTEIDSIPPLPLYALLSADLDTSYKIADES
GKVRKGSESQRKLSGDQYEDLFQVQAVTTDDFVSFATEKKESKSRVINLSQYGLTYFGPE
HARVLSSHLMHSSLPGLTRLEQMFLVALADTVATTSTEVGGSREKSCTGGETLDECGLRY
LLAMRLHTCLLTSLPPLYRLQLLHQGVSTCHFAWAFHSEAEEEMLNMIPAMQRGDPQWPE
LRAMGVGWWVRNINTLRRTIEKVAKAAFQKKNDPLDAALFYLAIKKKAVLWGLFRSQHDD
KMTQFFSHNFNEDRWRKAALKNAFSLLGKQRFEQAAGFFLLAGSLKDAIEVCLEKMEDIQ
LAMVVSRLYESDYEASPSYKGILNERVLGCLKDGSGFICSKLHPDPFLRSMSFWIMKDYT
RALDTLLEQIPKEDDENPDVIVKSCNPVVFSFYNYLRTHPLLIRRHFASPEGSLSTVGLT
AEKSSADEINLIERKLFFTTANAHFKVGCPVLALEVLSKIPKVFKKTGSPLSKDTNVSAS
QPLENGGRGSDLDWSQTGAASSTVDWGSSGEVATAVDWSQPLVKLEDDGLQLEWENDKDE
EDDDEDDVGLTMKDSKSDEKITKQKDKSSPWSEKSPGLKRGDSAFESEVDVIAEQLKFRA
CLKILMTELRTLATGYEVDGGKLRFQLYNWLEKEIWALHQICNYKVEGKDSTNELDKWKD
IDSMELEGAVYKSDAGSYERHQLERRRLQAKQEHAERRKGWLRKNQALLRVFLSYCSLHG
AQGGGVASVRMELIFLLQESQQETTVKQLQSPLPLPTTLPLLSASIAATKTVIANPVLHL
TNHIHDIMYTIVQMDCPPHPNIHDDKTYTLHTQAASLSACIYQALCDSHSYSSQTETSQF
TGMIYQGLLLSERRRLRTESIEEHATPSSLPAEWPGVTSLINLVKSAQDEDQPKLNVLLC
EAVVAVYLSLLIHGLATHSSNELFRLAAHPLNNRMWAAVFGGGAKLIVKPKRSPEIAPAP
PARTEEIDKHRRRFNMRMLVPGRPVKETVVPPPVPAERPTYKEKFVPPELSMWDYFVAKP
FLPLSDSGALYDSDESLPSDDEDDDDAFLSDTQITEHSDPNSYSWALLRLVLVKLALHNV
KNFFPVAGLEFSELPVTSPLGNAVIKTLENWEQILLEKMNKFDGPPPNYINTYPSDVNAA
GGPAILRHKAMLEPDNTPFKAKHYLAFPVKRLWHFLVKQDGLQDTLIRYIFTKKRKQSES
LEDHVDQLKQNCIAEDHKTCKVEADLGYPGGKAKIIHKESDIIMAFAVNKASHNEIVLAS
THDVQEIDVSALLAAQPYTWIGEEFDKESRSSDDLDHRSSHTNIAQASAPPFAPSQIPAS
ASMPWLGSGQTSTGANVIMKRNLNNVKRMTSHPVYQYYLTGAQDGSVRMFEWGRPQQLIC
FRQAGNARVTRLYFNSQGNKCGVADGEGFLSLWQVNQTASNPKPYLSWQCHSKATSDFAF
LTSSSLIATTGQSNDNRNVCLWDTLVSPNNSLVHAFPCHDNGATVLQYAPRQQLIISGGR
KGFICIFDIRQRQLLHTFQAHDSAVKALAMDSTEDYFITGSAEGNMKVWKLTGHGLIYSF
THEHAKQSIFRNIGAGVVKIETGPGNRIFTCGADGTLKMRVLPDRYNAPEL
NT seq
9156 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttcaccaagtgctgaccggagctgtcaatccaggagacggctgttactcggtc
ggtagcgtcaatgacattcctttcacggcatatggctcaggatgtgatattgtcattttg
gcaagtgactttgagtgtgttcagatcattccgggtgctaaacatggaaacattcaagtg
agctgcgtggagtgttcacatcagctgggaaggattgcagcctcctatgggaatacagtg
tgtatttttgaaccagttgttacaaatctccacaaaagaaacaatcagctaaattatcaa
tggcaaaagacaggacaatttttcctcaattctatgacctacaatttggcatgggaccca
caaggtaaccggatattaacagcaacagaccgactgcagctttgggcgccgccgtctggt
gatgttcttttggaggaggatgatggtcaggctgcagatgataaattaccaccagtctta
aatgattggaaatgtgtctggcagtgcaagactgcagtgtctgttcatattatgaagtgg
tcctctgatggtgaatactttgcaacagcggggaaggatgactgtttactgaaggtgtgg
tatccaaccactgcctggaagtctgctgttgtaatcccggatctccctgaccgaaagtca
gacgctgtccatttctcctttgtgtacttggcacatcctcggactgtgacaggcttttca
tggcggaagaccagcaaatacatgcctagagggtctgtgtgcaatgtgctgcttacttcg
tgtcaggatggtgtctgtcggctctggtccgaaaccttgttaccggaggatagtcttctt
ggtggccaaatcactgaaagcagcactagctccagcagcagccttcctcgtctcggaaat
cagaaggataagatacagcatgctctggagacaattcaccactttaaacatctgagaaga
ggtcggaggagatcttcagctctggtcgcccacacagatctgttgccaagccagcttggt
tcacatgatgtgcacaggcagatttctcaccatgctaatgcactctgccattttcacatt
gcagcaagtatcagccctagcacagctattccaacggctttggctggcacagctttcaca
tctgatgaaggaaatggaggctttgttgttcattggcttaacaataaggatctcagcttt
acatctgccatggatttgtttatgcagcaactaagaaagatctctgagcagcaggtggaa
caaggatgtgaagaccttgatcaagacattttacagaagcttgatcctgaactggaagat
gtttcagataaagggtcatccgagcatgaaggggaacaagaaggaagtaccaaggcatca
tcccctggttccagtgctagtgtgccactccccacagtgctgcttgatcggaaaatggag
gcacttgttaatgagtggaataggaacccagatatgctttttacaattcatcctgttgac
ggctcatttttagtgtggcatgtaaaatacttagatgaatacatcccaggaatcttcaga
caggtccaggttgcattttcttctcgtattccagtagcttttcccaccggagatgctaac
tcgcttagtaaaaacatcatggtgtatgcttgtacatttactgaaaaagattcaagtgat
gctgggcaacagaaggagaaaattaaaagtgttcctcatagtgcatcagaaacaaatgta
cttggctctggaactggccattcagtggtgcctgtcattagtcctgcagtaatgatggtg
tcaaaacacatagatggatccctgaaccagtgggctgttacttttgcagacaagtctgcc
ttctcatcagtattgactgtctctcacaaatttagatattgtggacatcgtttccatctt
aatgacttggcctgtcatactgtacttccattgttgctgacttcttcacatcataatgct
ttgttaacgcctgaatcggagaacgaatgggacgctgaaaaagtgaagcaaaaactacag
cccttcaaacctcagaagggtttctcgagaaagcagctgaaaaatgcagcaactcgaaca
tttcatgaccccaatgcaatctacagtgagctgattctctggcgtgtggatcacatagga
cccttatcatgcacaggaggggtgtctgagttggcacgaattaactctctatatacttca
gccttttctaatgtcgcttggcttccaacactgataccaagccactgtcttggaacttac
tgcaattctgcaagtgcttgctttgtggcttcagatggcaagaaccttcggctgtaccaa
gcagtggttgatgctcgaaaacttttagatgaactttcagatccagagatatctaaactt
gttggtgaggtctttaatattgtcagccagcagtctacagctcgtcctggttgtattatt
gaacttgatgtcattacaaaccagtgtggatcaaccacgcaacttcttcatgtgtttcaa
gaggatttcatcttgggttataaaccacatgatgagtctgtcgcttatgaggatctggaa
tcttccagttttcagacagaacaagggtaccgccctccactattttcagaaacgtttttt
cttgtggtaattgcaaaggacaacaatagacgttctgttcttcaaatgtggcatctccat
ttaaaatctgtgcaggcttgtgccagtaatacgacacctgagcagacatttgagaacaag
ctcactgttccagagcaagacaatgcagagtcttctccagatacttcccctggccaaagc
cctcttccacgctcttcttcaacagctaatctccagtctgccagcaagctcatcctgagt
tccaaattagtatacagccaaccgctggatcttcccaatgacgtcgaagttatccgtgct
acaccttcagcagggcatcttagctcctcgtctatttacccagtctgtctcgctccctat
ttaatagtgacaacctgctccgacagtaaggttaggttttggcactgcattgtggaaatt
gatccaagttatgaagatcctgaagaagggcgcacttaccgatgggagccatggtcttta
atgaacgaagaagatgacagcaatagtgcagtgtgtgttcctgggaggccagtggctgtc
agctgttcttatattggtcgccttgcagttgcttttaaacagctaaagcaaagcaatggt
tgcatatcaaaagagttctcaatgcacgtgtctatatttgaatgcgagtcaaccggagga
tctgagtgggtgttagaacagactattcacttagacgatttagcaaatgtgggacatgct
ctggaccccagggtcagtgttgacagtaacttgtgtgtatatagcaagtcagatttgtac
cttaacaaagaccatcatctgactccaaatgtaaaacattttgttcaccttgattggtta
tccaaagaagacggctcacacatactgactgtgggggtcggatccagcatattgatgtat
ggcagaatttctggcattgtaaatgaacaaaccagcagcaaggatggtgttgcagtcatt
actctaccactaggtggaagcattaagcaaggaataaaatccaagtggatccttctgaga
tccgtggacttggtatcctcagtggatggcacaccttccttaccagtgtcactgtcttgg
gtaagggatggaatactagtaataggaatggattgtgaaatgcatgtctatgcccagtgg
aaacaagacaagaaatgctgtggtgaaactgagagtgacagtctgtcatcttctgaaaac
atagcaggccaagttgactcaagaggatttgacacgaaagcccgtgcaatgaagcacagt
gtttttgatggtcctgctactgcaggtgatgctttcgcagctcctactgttcttcaggat
gggggtctgtttgaagctgcacattctctttcacctactcttcctcagtaccatcccact
caactcttggagctcatggatttagggaaagttcgaagagcaaaagccattctttctcat
ttggtgaaatgcattgctggggaggtggcgattgtgagagatgcagaggcaggagaagga
ggagccaggagacacctttctcggaccatcagtgtaagtggtagtacagcgaaggacaca
atcatagctggaagagatggagtccgtgactacactgaaattgactcaattccgccattg
ccattatacgccttgctgtctgctgacctggacacgtcctataaaattgcagatgaaagt
ggaaaagtgcgcaaaggctcagagagtcaacgaaagctatcaggagatcaatacgaagac
ctatttcaggttcaagctgtgaccactgatgactttgttagctttgctactgaaaaaaaa
gaaagcaaatccagagttattaatttgtcacaatatggcctgacatactttggcccagag
catgctcgagttttatcaagccatctgatgcattctagtttacctgggctaactcgcctt
gagcagatgttcctggtcgcattggctgacactgtggctacaacaagcactgaagttggc
ggaagcagagaaaaaagttgtacaggaggggaaacacttgatgaatgtggtctccggtat
ttgctagccatgcgcttgcatacatgtttgctgacatcactaccgcctttgtaccgcttg
cagctgttacaccaaggtgtttctacctgtcattttgcttgggcttttcactctgaggca
gaagaagaaatgctgaatatgatcccagcaatgcaaagaggagatccacagtggcctgag
ttgcgagccatgggagttggctggtgggttcgaaatattaatacgctacgaaggaccatt
gagaaggttgcgaaagctgcatttcaaaagaaaaatgatccattagatgctgcattgttt
tatcttgctataaagaagaaagcagttctttgggggttgtttaggtctcagcatgacgat
aagatgacacagtttttcagccacaacttcaatgaagatagatggcgcaaagcagcttta
aaaaatgccttttctttactgggaaaacagcgctttgagcaggctgcaggcttcttttta
ctggctggctctttgaaagatgctattgaggtttgtcttgagaaaatggaagacatacag
ctggccatggttgtttcacgtctgtacgagtcggattatgaagcatccccctcctacaag
ggtatcctcaatgaaagggtactaggctgtttaaaagatggttctggcttcatctgcagc
aaactacaccctgatcctttcctgcgcagtatgtcattctggataatgaaagactacaca
agggcactggatacattattagagcagattccaaaggaagatgatgaaaatccagatgtg
attgtgaaatcttgcaacccagttgtcttcagtttctacaattatttacgaacccatcct
ctgctgatccgaagacactttgcatcaccagaagggtcattgtccaccgtaggacttaca
gctgagaaaagcagtgctgatgaaatcaatcttattgagagaaaactattctttacaact
gcaaatgctcactttaaagtgggttgccctgtactggctcttgaggtcctttctaaaata
ccaaaagtctttaaaaagacaggatcccccctaagcaaagacacaaatgttagcgcatca
cagccactagaaaatggcggaagaggtagtgacttggattggtcacagactggggcagca
tcctctactgtagactggggaagcagcggtgaagttgctactgctgttgactggagccaa
cctctcgttaaattggaagacgatggattgcagctcgagtgggaaaatgacaaagatgag
gaggatgatgatgaggatgatgttggtttaaccatgaaggattccaaatcagatgaaaag
attacaaaacagaaagacaagtcaagcccatggtcagaaaaatctccaggtctaaaaagg
ggtgattctgcctttgaatcagaggttgatgtcattgcagaacagctgaaattcagagca
tgtttgaaaatactgatgactgagctaaggacattggctacaggttatgaggtggacgga
gggaagctcaggtttcagctttacaactggttagaaaaggagatctgggcactgcatcaa
atctgtaactataaagtagaagggaaggattccacaaatgaactggataaatggaaagac
attgattcaatggagctggaaggtgctgtgtacaagtctgacgctgggtcgtacgaacgt
caccaattagagcgtcggaggttgcaagcaaagcaagaacatgctgaaaggcgcaagggc
tggctgagaaagaatcaggcacttctccgagtgtttctgagctactgtagcttgcatggt
gcacagggaggtggtgttgcatcagtaagaatggagctcatctttttgttgcaagagtca
cagcaggaaaccacagtaaagcagcttcagtctcctcttccattgccaacaacactgcct
ttactttctgcaagcatagctgcaaccaagacagtcattgccaacccagttttgcacctg
actaaccatatccatgacattatgtatactatagttcagatggactgcccacctcatcca
aacattcacgatgacaagacttacacattacacactcaggcagcctcactttctgcttgc
atctatcaagcgctctgtgatagtcacagctacagcagtcagacagaaacaagtcagttc
acaggaatgatttatcaaggtttattattaagtgaaagacggagattacgaacagagagc
atcgaggaacatgcaacaccaagctctcttcctgctgagtggccaggtgtcacatcactc
attaaccttgtaaagtcagctcaggatgaggatcagcccaagctgaatgtgttgctttgt
gaagcagttgtggctgtctacctcagtttgttgatccacggccttgccacccattctagc
aatgaactttttcgattagctgcccatccgctgaataatagaatgtgggcggcagtgttt
ggcggaggagcaaaactgatagtcaaacctaaaaggtcaccagaaattgcaccagctcct
cctgctcgcacagaagaaattgataagcatcgtcgtagattcaatatgagaatgctagtg
cctggcaggccagttaaggaaactgtggttcctccacctgtacctgcagagaggccaacc
tacaaagagaagtttgtccccccagaactcagcatgtgggattactttgtagcaaaacca
tttcttcctctatctgatagtggtgctttgtatgattccgatgaaagtcttccaagcgat
gatgaggatgatgacgatgctttcctttccgacactcaaataacggagcactcggaccct
aattcatacagttgggcactgttgcgattagtactggtcaagctggctctacacaatgtg
aagaatttctttcctgttgcaggactggaattttcagaacttcctgtaacctcacctttg
ggcaatgctgttataaaaactttggaaaactgggagcagattcttcttgaaaaaatgaac
aagtttgacggcccaccaccaaattacataaacacctatccaagtgatgtcaatgctgca
gggggaccagcgatactaagacacaaagccatgcttgagccagacaacacccctttcaag
gctaagcattatttagcttttcctgttaaacggttgtggcatttccttgtgaaacaagac
ggtcttcaagacacacttattcgctacattttcaccaaaaagaggaagcagagtgagtca
ttagaagaccatgtggaccaactcaaacaaaactgcatagcagaagatcacaaaacctgc
aaggtggaggcagatcttggttatccaggtggaaaagctaaaatcattcacaaggaatca
gatattataatggcctttgcagtcaataaggccagtcataatgaaattgtgctagcttct
acacatgatgtgcaggaaattgatgtctctgcacttttagctgcacaaccatacacctgg
attggagaagagtttgacaaagagtccagaagctccgatgatcttgatcatcgctcctcc
catacaaacattgcccaggcaagtgcacctccatttgcacccagtcagatccctgcgtct
gcatcaatgccctggttaggcagcgggcaaacaagcacaggcgctaatgtgatcatgaaa
agaaacttgaataatgtgaaaagaatgacttcacatcctgtttaccagtactatttaact
ggagcccaggatggaagtgtacggatgtttgagtggggtcgtccacagcaacttatatgt
tttcgccaagctggcaatgctagggttacacgattgtacttcaattcccaaggcaacaag
tgtggggttgcggacggagaagggtttttgagcctttggcaagttaaccaaactgcatca
aatccaaaaccttatttaagctggcagtgtcacagtaaagccacaagtgactttgccttc
ctcacctcctcaagcctcatagccacaaccggacaatccaatgataacagaaatgtgtgt
ttatgggatactctggtttcaccaaataatagtctggtacatgctttcccctgtcatgac
aatggggccacagttcttcagtatgcacccaggcaacagctcatcatctctggaggcagg
aaaggcttcatctgcatttttgacatcagacagagacagctgcttcatacctttcaagca
catgattctgctgttaaagctctcgcaatggactccactgaggactactttattactggc
tctgcagaaggaaatatgaaggtgtggaaattaacaggccatgggttgatttattcattt
acacatgaacatgccaagcagtccatattcagaaacattggtgctggggttgtgaaaatt
gaaactgggccaggaaatcgcatctttacatgtggagcagatggaactctgaaaatgagg
gttttgcctgaccgctacaatgcaccggaactctga
DBGET
integrated database retrieval system
