Polyodon spathula (Mississippi paddlefish): 121299109
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Entry
121299109 CDS
T07273
Symbol
cspg4
Name
(RefSeq) chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pspa00535
]
121299109 (cspg4)
04091 Lectins [BR:
pspa04091
]
121299109 (cspg4)
Proteoglycans [BR:
pspa00535
]
Cell surface proteoglycans
Others
121299109 (cspg4)
Lectins [BR:
pspa04091
]
C-Type lectins
Others
121299109 (cspg4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
TMEM154
DUF4519
DAG1
Orf78
Motif
Other DBs
NCBI-GeneID:
121299109
NCBI-ProteinID:
XP_041082586
LinkDB
All DBs
Position
24:5563182..5611002
Genome browser
AA seq
2353 aa
AA seq
DB search
MRSLSFVLSALLPLVFLVEHCYGVSYFGESFCKIKATHDVTSFNLSLKFLTSKRSGLLFL
AAGLSDHLLLELRDGHLQVHLELGSGEVVLTSESGLKLNNLVYHDVTITLKERLLTMVID
SFFSRSAKLPNIQQDLSIDLGFYLGGTGNQERIPYLEGSAPPFRGCLSDIVFKFNDVDLL
ASDHEQSECHEVTKGCSEEFQAGEGDSIRLISPNSFVAFPTWNAQESRTLELLMKTTLEE
SLLLFHAGHQTDFITLGLVAGYLRGVVNQGSGAVILDNPFVQVADDQWHRVKIRIDPGSF
EITVDSQASGVSLSGTESLDLKGNLYFGVLWKTVQDDLGKTGVIYHLGDVTTDDSFVGCL
GDIKVNHEERSLRDVLISKDIQTTCDDEDYGDYSSSYDEESVVTPTPNSDVFEFIDVDPD
EQHCHPTGDMPPVFWNVTQLLKISPLIVPEGGQAFLDLNHLQPTVDLNSIGIRQSQIVFT
LQKDPWYGHMDLNVNNLNRRQKFTLLDVVNKKIKYIHDGSEIYMDQLLFDVVAYSTGFLP
ECLVTKQYTLPIQITPINDIPQLNGGDTWISEYTRTRLGSNFIRVVDADTRCDELKLSVT
SGPSKEEGYLENRQQPGQSIEEFTCMELKDGDIYYVHKSGSFAQLNIQVSDGRSISQPAT
FNLNVRKPQMALETNTGLILSQGEASEIGIHNLAVSSTPQNGVIVYNVTKSLHFGELQKL
ENREWKHVRSFHQEDLSQGHLRYFSTDTHHHSEVVVERVQFDVQLGHLLLRNNTFLIKIK
PSRFKMVKLVPLLVAKGGQKAITLEELEVVLKGQSVDYTSFQYMILKAPAKGSLLLLDRE
LFEGDTFTQEDLRKSHLNYKVRIRRAVEIEDEFQFQVFVDQQNSPVYTYPIRILADPEVP
VLINEGLTVVEGEEKVLTKDHLWLQSRKITDFVYRVIQNPQHGRLIRESPVGQPRFEGAV
SVFSNEDLLLERLIYKHDGSESSEDEFAFLALEQTKESSMVQALWQDSVKGVFKINIQSR
NDHVPVRLVDKTFSVVRNGQRLLTTEDILFGDEDSDFNDSQLVYVRMGIPYGNIVSAQDN
SQSLFRFTQGDLREKKVLFVHQGADRGRFQLQVSDGLHKTTALLEIQASDPYLQIANNTM
IVVDQGGSKKLDSTILSVESNMDIRDPKDIKYEVVVPPREGEITVNGQEAMSFSQDNLRK
GMVSYHHSDKSLNSKDYFEFTVKANQISVEGMFRIRIFREGYQLPPKVVKNELIYSFEGE
LTEINQDLLMVEHADFLPSEVVYYIKEPPQQGQIITLVNDSATTAAPSLYNTQSFTQEDI
NNGRVIYISKLGQQSDAFTVDVTNGMTSVENIRVLFEIIPNMIPLQVKNIMLMEGGSKAL
NKDILRVSDQYYSSVNIDLVVDEPPRHGTLRYLARDEYVVSFFTWNEVDQGLILYHHDGS
NTEFDSFTLTASASEIDRDSRPVTVNITIIPVDDDPPRVTVNSGLEIWPGETAEIGQSVL
SSEDWDTPAEDLKYSIEPPSNGRVALRSSPSNSIQSFSQAQINDGQVIFIHEGSLSGGFR
FTVSDGTHTSAQVFNVTVRQLSIVMETKGELSVYPGTSKQITNQILKAVTNGVREEALSE
EITYHVLRAPHLGKLVSANQTVVSSFTQAELETGSIWYQQELPNEAFWISQDSIDFLLSA
PPASELEHTLLVSISFLEQNPTGSSQLWKNTGLNVQEGESTTIDRSKLDASNFLASLPMP
LSASNDIVFEVTRFPAHGRLSLAGQALQLNFPYFLQEHIDRRELKYHHDGSDTEADSFTF
QVWLKPREQQLGSQSQKGIVIEEAFNISIKPINYNPPELVSQNLVLEVLQGSINVLSQEN
LNTVDQDSLPNKIIFTVTRGPTNGLLIDRDTNNIINWFTQANINSGQVAFVSDGSLSPGF
MDFIIFDGKHQTSSYTLNINVFSRNLTLVQAEEIHVKQGDTKTLITNNVLKGMVDSKKQQ
EVLYKITENPKYGTVVVDQLPVSQFSQREIDEGRVSFQFLNFTSHKDSFRFMAQSSAANV
SGVLNVTVSPLVDLPEDPLWPRETTILMDTSILNASKLANRTESIPSYKITLQPRGARFL
PSNSGKDKNGTLHFFTQKDLEEGRIVLEIFNQTDTGDQVQNDTFQFILMAKDVPPALGSL
SFRTAPYNSSVIYDAILIKVPSSGTGDLDQEGRNLPGVEDSSLASPDTSRWGETKDGASK
VHPTSRPVKAGTEKKQAMVSLENNILAIIIPICVIILLLIVAAILAYYLVHRNKTGKHDV
QVISSKPKNGEINKETFRKTEPAHSIPLSNMGPQVSKEGFQGNSGPPSGELDPEILQYCR
TTNPALKKNQYWV
NT seq
7062 nt
NT seq
+upstream
nt +downstream
nt
atgagatccctgagtttcgttctgagtgccctgctgccgctggttttcctggttgaacac
tgctatggagtgtcctacttcggtgaaagtttctgcaagatcaaggccacccatgatgta
acttccttcaacctatcgctgaagttcttgaccagcaaacgcagtgggcttctcttcctg
gctgctgggctcagcgaccacctgctgctagagctcagggatggacatctgcaggtacat
ttggagttggggtctggtgaagtggtcctaacatctgagtctggcctgaagctcaataac
cttgtttaccatgacgtgaccatcactttgaaggagagattgttgaccatggtgatcgat
tcatttttctcccgctctgctaagctccctaacatccagcaggacttgagcattgacctt
ggattttacttgggaggaacaggtaaccaggagaggataccctatctggaaggatctgcc
ccacccttcaggggctgcctaagtgacattgtatttaaattcaatgatgtagacctctta
gcctcggatcatgaacaatccgagtgtcacgaggtcaccaagggctgcagcgaggagttc
caggctggggaaggagattcaatccgcctcatcagccccaattcatttgttgccttccca
acttggaatgcacaggaaagcaggacacttgagctgcttatgaagaccacacttgaagaa
tcacttttgcttttccatgctgggcatcagacagactttataactttaggactagtggct
ggttacttaaggggggttgtaaaccaaggcagcggggctgtaatcctggacaatcctttt
gttcaagtggccgatgatcaatggcacagagtcaaaatcagaattgaccctggctcgttt
gaaatcactgtggatagtcaagcctctggggtgtcattgagtggcactgagagcttagat
ctgaaggggaatctatactttggtgttctttggaagacggttcaggatgatctcgggaaa
actggggtcatatatcatcttggggatgtgacaacagatgactctttcgttggttgtctc
ggagacataaaagtcaaccatgaagagagaagcctgcgggatgttctgatatcaaaggac
atccagaccacctgtgatgacgaagattatggggactattcaagctcatatgatgaggaa
tctgtagttaccccaactccgaactccgacgtatttgagtttatagatgttgaccctgat
gaacagcattgccaccctactggagacatgccacctgttttttggaatgtcactcagctc
ttaaaaattagcccactgattgtccctgaaggtgggcaagcctttctggacttaaaccac
ctccaacctactgtggacctaaacagcataggcatcaggcagtcccagattgtcttcaca
ctgcagaaagacccttggtatggtcatatggatttaaatgtaaacaacttgaatagaaga
caaaagttcacccttcttgatgtggtcaataagaaaatcaagtacatccatgatggttca
gaaatatacatggaccagctgctgtttgatgtggtagcctacagcacaggcttccttcct
gaatgtttggtaaccaagcagtatacacttcccatacagatcacacccatcaacgacata
ccacagctgaatggaggagacacttggatctcagagtacacacgcacacgcctgggttcc
aacttcatccgtgtagtagatgcagacaccagatgtgatgaactaaagctatcagtgact
tctggacccagtaaggaggagggttatttagaaaaccgtcaacaaccagggcagagcata
gaagagttcacatgtatggaacttaaagatggagacatctactatgtacacaagagtgga
agctttgctcaactaaatattcaggtctctgatggacgctcaatcagccagccagccacg
ttcaatctcaatgtcagaaaaccgcagatggcacttgaaacaaataccggcctcatcctg
tcccagggtgaagcatctgagattggtatccacaacttggcggtgtcatccactcctcag
aatggtgtcattgtgtacaatgtcaccaagtccctgcattttggagagcttcagaaactg
gaaaatagagagtggaaacacgtgagatccttccatcaagaagatctgagtcaaggccat
ttgaggtacttcagcacagacactcaccatcacagtgaggtggtggttgagagggttcag
tttgatgtgcaactgggccatctgctcctgagaaacaacaccttcttgatcaaaatcaag
ccctccagattcaaaatggtaaaactggttccactactggttgcaaaaggagggcaaaag
gctatcacactggaggagctggaggtggtcctgaagggacaaagtgttgattacacttcc
ttccaatatatgatcctgaaggcccctgctaagggtagtctgctgctgctggatcgagaa
ctatttgaaggagacactttcactcaagaagatctgagaaaatctcatctcaactacaag
gttaggatccgcagagctgtggagattgaggatgagttccagttccaggtgtttgtagat
cagcaaaactcacctgtatacacttacccaattaggattctagccgacccagaagtacct
gtcttaataaatgagggactgactgttgtagaaggtgaagaaaaagtcttgactaaagac
catctctggcttcagagtagaaaaataacagattttgtgtaccgggtcattcagaaccct
cagcatggacggcttatcagggaatctccagttggacagccaaggtttgaaggagcagtc
agtgtgttcagtaatgaagacctactcctggagaggctgatctataagcatgatgggtca
gagagcagtgaagatgaatttgcttttctggctttagagcagaccaaagagagctctatg
gtccaagctttgtggcaagattcggtgaaaggagtgttcaaaatcaacatacagtccagg
aatgaccatgtgccagtccgtttagtggacaagaccttcagtgttgtcagaaatggtcag
cgtttgttgaccacagaggacatcctctttggtgatgaagattctgacttcaatgattcc
caattggtctatgtgcggatgggtattccctatggcaatatagtgtcagcacaagataac
tcccagtcactttttcgtttcacccagggggacctaagggagaagaaggtgctttttgtg
caccagggtgcagatcgcggcaggtttcagctgcaggtatctgacggacttcacaaaact
acagctctgctagaaatccaggcctcagacccttatcttcaaatagcaaataataccatg
attgttgtcgaccaaggtgggtccaagaagctggacagcaccatcttaagcgtggagtcc
aacatggatatcagagacccaaaggacatcaagtatgaggtggttgtgcctccgagagaa
ggggagatcacagttaatggacaggaggccatgtctttttcccaggacaacctcaggaaa
gggatggtgtcataccaccacagtgataaaagtctaaactccaaggactacttcgagttc
acagtgaaagccaatcagatctcagtagaaggaatgttcagaataaggatttttagggaa
ggctaccagttaccgcctaaagtagtgaaaaatgagctgatctactcctttgaaggagag
ctgactgagatcaaccaggaccttctgatggtggaacatgctgatttcctaccctctgaa
gttgtttattacattaaagagcctccccaacaaggtcagattatcacactagtcaatgac
tctgccaccacagcagcccccagcttgtataacacccagtccttcactcaggaggacatc
aacaatggcagagtcatctacatctccaagctgggtcagcaaagtgacgccttcacagtg
gatgtgaccaacgggatgaccagcgtggaaaacatccgagttctctttgagattattcct
aacatgattccccttcaggtgaagaatattatgctcatggaaggagggtccaaggcactg
aataaagacatcctcagagtgtctgaccagtactacagcagtgtgaacatagacctcgtt
gtagacgagccacccagacacggcactcttaggtatctagccagagatgagtatgtggtg
tccttcttcacttggaatgaggtggaccaagggctgatcctctaccatcatgatggcagc
aatactgaattcgacagcttcacacttacagcctcagcttctgagatagacagggacagc
agaccggtgacagtcaacattactatcattccagtcgacgatgatcctcccagagttaca
gtcaatagtggattggagatttggcctggagaaactgctgaaataggtcaaagtgttttg
agtagtgaagattgggacacccccgcagaagatttgaaatattccatcgagcccccatcc
aatggacgggtggcactgcgatcatcgcctagcaacagcatccagagcttcagtcaagcg
caaataaatgatgggcaagtgattttcatccatgaaggttcgctgtctggtggttttaga
ttcacggtgagtgacggaacacacacctccgctcaggtctttaatgttactgtgaggcag
ctgtccatcgtcatggaaaccaagggggagctttcagtgtatccaggaacaagcaaacaa
atcaccaaccagatccttaaagcagtgaccaatggcgtgagagaggaggcgctctcagag
gagataacctatcatgttttgagagcaccgcatctaggcaaactggtctcagccaatcag
accgtggtgtccagtttcactcaagcagagctggagactggatctatctggtatcagcag
gagctccccaatgaggcattctggatttcccaagactccattgatttcctgctgtctgct
cctccagcctccgagcttgaacacacactcctggtatccatatccttcctggagcagaac
cccaccggctcctcccagctttggaagaatacaggtctgaacgtccaggaaggtgaaagt
acaaccattgacagatccaaattagatgcttccaacttcctggccagtctaccgatgcct
ctaagtgcgtccaatgacattgtgtttgaggtgacaaggtttcctgcacatggaaggctc
tctttggctggccaagccttgcaactgaactttccgtacttcttgcaagagcatatagat
agaagggaacttaagtaccaccacgatggttcagacactgaagcagacagcttcaccttt
caagtatggctcaagccaagggaacaacaacttggaagtcagtcacaaaaaggcattgtc
attgaagaggccttcaacatctccatcaagcccataaactacaatcctcctgaactggtg
agccaaaaccttgttctggaagtcctacagggttccattaacgttcttagccaagagaac
ctgaatactgttgaccaggacagtttgcctaacaagattatctttacagttacaagaggt
cctaccaatggtctcctaattgatagagacacaaacaacataatcaactggttcacacaa
gcaaacatcaactctggccaggtagcttttgtcagtgatggaagcctatctcctggtttt
atggacttcattatctttgatggaaagcatcagacttcctcttatacattgaatatcaat
gtattttcaaggaatctgactttggtccaagctgaggagatccatgttaaacaaggagac
accaaaactctaataacaaataatgttctcaaggggatggtggattcgaagaaacagcag
gaggtgctctacaagataactgaaaatccaaaatatggaactgtggtagttgatcagctc
cccgtgtctcagttctcacagagggaaattgatgaagggagagtcagcttccagttcttg
aacttcacatcccataaggacagtttcaggttcatggcgcaatccagtgcagccaatgtt
tctggtgttctgaacgtcactgtgagtcccctggtggacttaccagaggatcccctttgg
cccagagaaacaaccatcttgatggacaccagcatattaaatgcctcaaaactggccaac
aggactgagagtattccatcttacaagataacacttcaaccaagaggagccaggttttta
ccatctaacagcggcaaggacaagaatggcacattacacttcttcacccaaaaagacctt
gaggaaggaaggattgtcctggaaatatttaaccaaacagatacaggtgatcaggttcag
aatgatacctttcagtttattctgatggcaaaagatgtcccgccagctctgggttcctta
tccttcaggactgccccctacaactcctctgtcatctatgatgcaattttgatcaaggtt
ccatccagtgggactggggacctagaccaagaaggcaggaacctccctggggtggaggat
tcttctttagcctctccagatacatcacggtggggagagactaaagatggggcttccaaa
gttcacccaacctcccgtcctgtgaaagcaggaaccgaaaagaaacaagcaatggtatct
ttggaaaacaacattttagcaatcatcattcccatctgtgtcatcatcttgctcttaatt
gtggcggctatcttggcatattacctcgtccatcgcaacaaaaccgggaagcatgatgtc
caggtgatctcctccaagcccaaaaacggagagatcaacaaagagacatttcggaagact
gagcctgcccacagcatacctctatcgaacatgggcccacaagtctccaaggaagggttt
caaggcaattcaggaccccccagtggagaacttgaccctgagatattgcagtactgtagg
acaacaaacccagctttaaaaaagaatcagtactgggtgtaa
DBGET
integrated database retrieval system
