Polyodon spathula (Mississippi paddlefish): 121299165
Help
Entry
121299165 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase NEDD4-like isoform X1
KO
K10591
E3 ubiquitin-protein ligase NEDD4 [EC:
2.3.2.26
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04120
Ubiquitin mediated proteolysis
pspa04144
Endocytosis
pspa04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121299165
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121299165
09144 Cellular community - eukaryotes
04530 Tight junction
121299165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121299165
04121 Ubiquitin system [BR:
pspa04121
]
121299165
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121299165
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121299165
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
121299165
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
HECT type E3
121299165
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Morphogenesis factors
121299165
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HECT
WW
Motif
Other DBs
NCBI-GeneID:
121299165
NCBI-ProteinID:
XP_041082690
LinkDB
All DBs
Position
24:complement(10585481..10617803)
Genome browser
AA seq
1307 aa
AA seq
DB search
MAQRLRLHFASRRSNTDPLSETCGNGMENNLCMSSHSPSENTSQHVIQRTVTPGQLALPP
LSAEIGHLQHCSSLFIPQLNSSKKSNSLQISLQSRKLNGDLETCGSVVGGLGCSYGKTKK
EESNSCGSSGIKSGIISFTKEIVNGGDSRGIPTAEGFSCNSNSANGFGSCVSSTVSDSTR
TCQDIPCNIRTRDFGSCASPSSSTTSDAGYCSSSSIYFEPEILERTVGIERTPVKRKPKV
PLRRCSSLVIFPRSPCNTPPASPISPGPLPARSSYQTSHQFLLSAVEPTQEDDQIASKGS
IATAVNGLRLSKSSCPTVELRDIRPLHLNGSLPDRPQETDSGQDQPAARERSQRHSTVLL
HFAQQREVAIESESSTNGQRSSEHPVQEPEPSGCPQYHHIKLIRSTSACLPLQKHSDSQL
DSHRETERDGTQANNGCHSALQRSLSFEVPCQQISYHLSTSTQHNSKTGAPHVHIHLSPG
TDGRICGSLMEINSNCKSENDKAIPGRSTKTRDDFLGQVDVPLQQLPTENPDIERPYTFK
DFLLHPRSHKSRVKGHLRLKMTYLPKNNGSEEDNEEQSEDVEPGWEILDQQDTSGTCRQL
PVLPPGWEERQDNLGRTYYVNHETRTTQWHRPTAQDSQAEAEQQQTINHEAHHAFTNRRQ
ISEAASHERRESPDSWEIITEDETTLYNNHSQQSPPPPHSPVEHSVCDVQSPPADELSQR
RAITVQSHSSRRGSAQAVTVEEHPTHPVLLPTSSGLPAGWEEKQDSKGRIYYVNHNSRTT
TWTRPVIQTTIEAVQAMSSQGPVVYHPPQPSPETSPQHSLAQKSKYESGFLPAGWELRSA
PNGRPFFIDHNTKTTTWEDPRLKIPVQVRRRPSLDPTDLGPLPPGWEERVHTDGRIFYID
HNTKATQWEDPRLQNAAITGPAVPYSRDYKQKYEYFRKKMKKPADIPNRFEMKLRRNAIL
EDSYRRLLPIKRADFLKARLWIEFENEKGLDYGGVAREWFFLISKEMFNPYYGLFEYSAT
DNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDAFFIRPFYKMMLQKPITLQD
MESVDNEYFNSLKWILENDPTELDLRFTVDEELFGQTHQHELKLGGSDIVVTNKNKKEYI
HLVIQWRFVNRVQQQMSAFKEGFYELVPLDLIKIFDENELELLMCGLGDVDVNDWRENTK
YKNGYCTTQPVIQWFWKTVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIE
QWGTPDKLPRAHTCFNRLDLPPYESFEDLREKLHIAIENAQGFDGVD
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atggcacagcggctgcgtttgcattttgcttcaaggagaagcaataccgaccctttgtct
gagacctgtggcaatggcatggaaaacaacttgtgtatgtcctctcacagtccttctgaa
aatacttcacaacatgttattcaaaggacggtaaccccagggcagctggctttgcctccg
ttgtcagcagagattggtcatttacagcactgttcatcactatttataccacagcttaac
agcagcaaaaagagcaattctttgcagatttccctgcagtctcggaaattaaacggagat
cttgaaacatgtggcagtgttgttggtggtcttggttgtagttatggaaaaacaaaaaag
gaggaaagtaatagctgtggatcaagtggcattaaaagtggaattatctcttttaccaag
gaaatagtaaatggtggcgattctcgcggcattcctacagctgaaggtttttcttgtaac
agcaacagtgccaatggttttgggtcatgtgtaagcagtaccgtgagtgacagcaccagg
acttgtcaggatattccttgtaacatcagaaccagggattttgggtcctgtgcaagcccg
agcagcagtaccaccagtgatgcgggttattgtagcagtagcagtatttattttgaacct
gaaatccttgagcgcacagtgggaatagaaagaacacctgtaaaacggaagccgaaggtg
ccactgaggcgctgctcttctttagttatatttcctcggagcccctgtaacacgccacca
gcatctcctattagcccaggacctctgccagcacgtagttcctaccagacctcacaccag
tttttgctttctgctgtcgagcctacgcaggaagacgatcaaattgcatcaaagggttcc
atcgcaacagcggtcaatggcttaaggttatccaaatccagctgcccaactgttgagctt
agggacataagaccactgcacttgaatgggtcgctaccagatagaccccaggaaactgac
agcggccaggatcagccagctgctcgggaacgatcacaaagacactcaactgttttgctg
cattttgctcagcaaagagaagttgcaattgagagtgagtcgagcacaaatggccagcgc
agttctgagcatccggttcaggaaccagaaccaagtggttgtccgcagtatcatcatata
aaactgatccggagcacgtctgcctgtctgcccttgcagaaacattctgactctcaacta
gattctcatagagaaactgaaagggatggtacccaagcaaataatggttgtcacagtgct
ctgcagaggagcctttcatttgaagtgccatgccaacagatttcataccatttatctaca
tctacacaacacaattcaaagacaggggcccctcatgtgcacatacatttatcacctggc
accgatggaaggatatgtggttccttaatggaaataaatagcaactgcaaaagcgaaaat
gataaagccatccctggaagaagcacaaagaccagggatgattttctgggtcaggttgat
gttcctcttcagcagttaccaacagaaaatcctgacattgaaaggccatacacatttaag
gattttcttcttcatccaagaagtcataaatccagagtgaagggccatcttagactgaag
atgacatacttgcctaaaaacaatgggtcggaagaagacaatgaagaacagtctgaagat
gtagagcctggctgggaaatattggaccaacaggacacctctgggacgtgccgccagctt
cctgtgcttcctccaggctgggaagaaagacaggataacctgggcaggacctactacgtc
aaccacgaaaccagaacgacacaatggcacaggcccacagctcaggacagtcaggcagaa
gcagaacaacagcaaactattaaccatgaagcacatcatgcctttactaatcgccggcag
atatctgaagcggcaagtcatgagagaagagagtctcccgatagctgggaaataataacc
gaagatgagaccacactgtataataaccacagccagcagtctcctccaccacctcactct
cccgttgaacacagtgtttgtgatgttcagagtcctcctgcagacgaactgagccaacgc
agagccatcacggttcagagccattcaagcagaaggggaagtgcacaggcagttactgtt
gaagagcatcctacacatcctgtgttattgcccacttcgtcagggctgccagcaggttgg
gaagaaaagcaagatagtaaaggaagaatatactatgtaaatcataacagcagaacaact
acatggacgcgcccggtcattcagactacaatagaagctgtgcaagccatgtcctcccag
ggtcccgttgtgtaccaccctcctcaaccttctccggaaacttcacctcagcattcactg
gctcaaaaatccaaatatgaaagcggattcctccctgctggctgggaattgcgtagtgca
cccaatggcagacccttctttattgatcacaatacaaaaaccaccacgtgggaggatcca
agattaaaaattccagttcaggtgagaaggcgaccctccttggatcctacagaccttggg
ccgcttccacccggatgggaggagagagttcatacggatggcagaatattctacattgat
cataacaccaaagctacacagtgggaagatccacggctacagaatgcagcaataaccgga
cctgctgtgccttattccagggattataaacagaagtacgagtacttcagaaaaaagatg
aagaaaccagctgatattcctaaccgttttgaaatgaagctgcggcgaaatgctattctg
gaagactcctacaggagactgctgcctatcaagagagcagacttcctgaaagcacggctg
tggattgaatttgagaatgagaagggcctggattatggaggtgttgccagggaatggttc
ttccttatttccaaagaaatgttcaatccctattatggactgtttgaatattcggctact
gataactacaccctacagattaaccccaattctggtttgtgcaacgaagatcacttatct
tatttcaagtttatcggacgagttgctggaatggccgtttaccatgggaagctactggat
gcattcttcattcggcctttctataaaatgatgctgcagaagccaataacactgcaagat
atggaatcggtggacaatgaatacttcaattcactgaagtggattctggaaaatgatccc
accgagctggacctcagattcacagtggatgaggagctctttgggcagactcatcagcat
gagctaaaactgggtggatcagacattgtggtcacaaacaagaacaagaaagagtatatc
cacctggttatccaatggagatttgtgaacagagtacagcagcagatgtctgccttcaag
gagggattctatgaattggtacctctggatctcatcaaaatatttgatgaaaatgaattg
gagctgttaatgtgtggacttggagatgttgatgtgaatgactggagggaaaacactaaa
tacaagaatggctactgtacaacacaacctgtcatacagtggttctggaagacggtgcta
ctaatggatgcagaaaaacgcatccgactgctgcagtttgtcactggcacctctcgagtg
cccatgaatggctttgcagagttgtatggatctaatggaccacagttatttaccattgaa
cagtggggaacacctgacaaactacctagagctcacacttgcttcaaccgtttggatttg
cctccatatgaatcatttgaggatttgcgagagaaacttcacatcgcaatagaaaatgca
caaggatttgatggagtggattag
DBGET
integrated database retrieval system
