Polyodon spathula (Mississippi paddlefish): 121299194
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Entry
121299194 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: glutamate receptor ionotropic, kainate 5-like
KO
K05205
glutamate receptor, ionotropic kainate 5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121299194
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121299194
Ion channels [BR:
pspa04040
]
Ligand-gated channels
Glutamate (ionotropic)
121299194
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GFIT
Motif
Pfam:
ANF_receptor
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
Peripla_BP_6
Motif
Other DBs
NCBI-GeneID:
121299194
NCBI-ProteinID:
XP_041082755
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Position
24:19239813..19273862
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AA seq
1182 aa
AA seq
DB search
MLIKKNNNHHAIYQSILHFCLFLLNTRRSVRWRGSERTVYLYRFCLLGILGSGRRQLGCK
PTVLHEEEKKMPALPALLLLSIHFLFLFLTMVPPPYSQGAVLSSLRMAAILDDQTVCGRG
ERLALALARENINSVTEVPEKARVEVEIFELQRDSQYETTDTMCQILPKGVVSVLGPASS
PASGSTVSHICGEKEVPHVKIGPEETPRLPYLRFASVSLYPSNEDLSLALRAILSFFSFP
STSLICAKAECLLRLEELVRRFLISRDTLSIRMLDDSQDPTPLLKEIRDDKIGTIIIDAN
ASMSYLILRKAAELGMTSAFYKYILTTMDFPLLRLDDIVDEQSNILGFSMLNTTHPFYVE
FLRSLNMSWRENCDMSLYPGPALSSALMFDAVHVVVSAVRELNRSQEIGVKPLSCTSPQI
WQHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKHRGGHKEIGIWYSNNTLAM
NATTLDINVSETLSNKTLIITTILENPYVMRKSNYQELQGNGRYEGFCVDMLKELADILK
FKFRIKLVDDGLYGAPEPNGSWTGMVGELINRKADLAVAGFTITAEREKVIDFSKPFMTL
GISILYRMHMGRKPGYFSFLDPFSPAVWLFMLLAYLAVSCVLFLAARLSPYEWYNPHPCL
QDRRDILENQYTLGNSLWFPVGGFMQQGSEIMPRALSTRCVSGVWWAFTLIIISSYTANL
AAFLTVQRMEVPIESADDLADQTNIEYGTIHGGSTMTFFQNSRYQTYQRMWNYMQSKQPS
VFVKSTEEGIARVVNSKYAFLLESTMNEYHRWLNCNLTQIGGLLDTKGYGIGMPLGSPFR
DEITLAILQLQENNRLDILKRKWWEGGKCPKEEDHRAKGLGMENIGGIFVVLICGLIIAV
FVAVMEFVWSTRRTAESDEVRDSGQTHKPRASRISVCQEMLSEFQNAVSCKKMSRSRRRR
PMPRRGRLSLSTPKPLRLVREMRLNNGKLYSGAGPLTGGGHASSNTLGAAAGAPSELGPG
PQRLLEDPLSANTPPPPPPPHPPPPQLQTPRSWGHVRICQECRRHTEPSSSKGEQLLHPA
PAPGTSRCPASPSAPLPRAPPPPPLAVRGAPGRLPASRTERGSAETLHHTGQSRNGHSQP
QKQAGKARAVKQRNSGLQGLSSENLTVCRGSWDFFRGFCSRF
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaaaaaaaacaacaaccaccatgctatatatcaatcgatacttcatttctgt
ttatttctattaaatacccgtcgatcggtgagatggaggggatcggaacgaacagtttat
ttgtatcgattctgccttttgggaattcttggaagtgggaggcgtcagctgggctgcaaa
ccgaccgttctccatgaggaggagaagaagatgccggctctgccagcactgctgctgctg
tcgattcacttcctcttcctgtttctgaccatggtcccgcccccttacagccaaggagcc
gtgctgtcttcactgcgaatggctgctatccttgatgatcagacagtgtgtggtcgaggg
gagaggctggctctagctctggctcgtgagaatataaacagcgtcactgaggtcccagaa
aaggccagggtggaggtggagatattcgagctgcagagagactcccagtatgagaccact
gacaccatgtgtcagatcttgccgaagggtgtggtctctgtgttaggccccgcctctagc
cccgcctctggttctactgtcagtcacatctgcggggagaaagaggtcccccatgtgaag
atcggtcccgaggagacgccccgcctgccctacctgcgctttgcctcggtcagcctgtac
cccagcaacgaggacctgagcctggccctgagagccatcctgagcttcttcagcttcccc
tccaccagcctgatctgcgccaaggcagagtgtctcctgcgcttggaggagctggtgcga
cgcttcctgatctcgcgggacacgctgtcgatccgcatgctggacgacagccaggatccc
acccccttgctgaaggagatccgggacgacaagatcggcaccatcatcattgacgccaac
gcctccatgtcatacctcatactgaggaaggctgcagagttgggaatgacgtcagccttc
tacaagtacatcctcacgactatggatttccccctgctccggttggatgatatcgtggat
gagcagtctaacatcctgggcttctccatgctcaacacgacccacccgttctacgtggag
ttcctgaggagtctcaacatgtcctggagagagaactgcgacatgagcctgtaccccggg
ccagcgctctcctcagctctcatgtttgatgcagtgcatgtggttgtcagtgctgtgcga
gagttgaaccgcagtcaggagatcggggtgaagccgctctcctgcacctcccctcagatc
tggcagcacgggaccagcctcatgaactacctgaggatggtggagtatgatggactcact
ggtcgcgtggagttcaacagcaaaggccagagaaccaactacaccctccgaatcctggag
aagcaccgcgggggtcacaaagagattggtatctggtattctaacaacacactggcgatg
aacgccacaacgctggacatcaacgtgtcagaaaccctgtccaacaaaacgttgatcatc
accaccatattggagaacccgtacgtgatgcgcaagtcgaactaccaggagctgcagggg
aacggccgctacgagggcttctgcgtggacatgctgaaggagctcgctgacatcctcaag
ttcaagttccggatcaagctggtcgacgacgggctgtatggggcgccagaacccaacggg
tcatggaccggcatggtgggggagctgatcaaccggaaagctgacctggcagtggctggt
ttcaccatcacagcggagcgggagaaagtgatcgacttctccaaaccctttatgaccctg
gggatcagcatcctgtacagaatgcacatgggtcggaagcctgggtacttctcgttcctc
gatcctttctctccggcggtctggctcttcatgctgctggcatacctggctgtgagctgc
gtgctgttcctggcagccagactcagcccctacgagtggtacaaccctcacccctgtctg
caagaccgacgggacattttggaaaaccagtacacactgggaaacagcctgtggttccca
gtggggggattcatgcagcaggggtctgagatcatgccgagggccctgtcaacacgctgc
gtcagcggggtctggtgggccttcactctgatcatcatctcctcgtacacggctaacctc
gctgccttcctcaccgtgcagcgcatggaggttcccatcgagtctgctgacgacctggca
gaccaaaccaacatcgagtatgggaccatccacggggggagcaccatgaccttcttccag
aactcgcggtaccagacgtaccagcgcatgtggaactacatgcagtcgaagcagcccagc
gtgtttgtgaagagcactgaggagggcatcgcccgcgtggtcaactccaagtatgccttc
ctgctggagagcaccatgaacgagtaccaccgctggctcaactgcaacctcacccagatc
gggggactgctggacaccaagggctatggcatcggcatgcccctgggctccccgttccgt
gacgagatcacgctggcgattctgcagctgcaggaaaacaaccgtctggatatcctgaag
aggaagtggtgggaggggggcaagtgtccgaaagaggaggaccaccgggccaaggggctg
gggatggagaatattggcgggatcttcgtggttctgatctgtgggctgatcatcgcggtc
ttcgtcgctgtcatggagttcgtgtggtcgacacggcgcacagcggaatcagacgaggta
cgagacagcgggcaaacccacaaacccagagcgagcagaatctcggtgtgtcaggagatg
ctcagtgagttccagaacgctgtctcctgtaagaagatgtctcgctcccggaggaggcgg
cccatgccccgccgcggccggctctccctctccaccccgaagcccctccgcctggtccgg
gagatgcgactgaacaacggcaagctctactcgggggccgggcccctgaccggggggggc
cacgcctcctccaacaccctgggggccgcggcgggggccccctcggagctcggcccggga
cctcagagactcctggaagaccccttgagcgccaacacacccccgccacccccaccgcct
cacccccctcccccccagctgcaaacccccaggagctggggtcacgtccggatctgtcag
gagtgtcggaggcatacagagccttcgagcagcaagggggagcagctcctgcaccctgcc
cctgccccggggacctcccgctgccccgcctctccctccgcccccttgccccgcgctcct
ccaccaccacctctggcagtgaggggagccccaggcaggctgccagcgagcaggactgag
agagggagcgcagagactctgcaccacacgggccagagcaggaacggacactcgcaacca
cagaagcaagccggaaaggctagagcggtcaagcagaggaattccggacttcaaggactg
tcaagtgaaaacttgacagtgtgccggggctcctgggacttcttccgagggttttgttcc
aggttttaa
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