Polyodon spathula (Mississippi paddlefish): 121299340
Help
Entry
121299340 CDS
T07273
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121299340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121299340
03036 Chromosome and associated proteins [BR:
pspa03036
]
121299340
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121299340
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121299340
mRNA degradation factors
5'-3' decay
Decapping complex
121299340
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121299340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
121299340
NCBI-ProteinID:
XP_041082978
LinkDB
All DBs
Position
24:complement(18536198..18545616)
Genome browser
AA seq
491 aa
AA seq
DB search
MATARTENPTPMLMGLSKQNGQLRGQQKSAPPQSGPPGIGHPVKPPHLLQSAAPQKAGAP
QNSGGIRFGDDWKKNLQLPPKDMRIRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESMPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAIVMVPTRELALQV
SQICIQISKHMGEVKVMATTGGTNLRDDIMRLDETVHVIIATPGRIVDLIKKGVAKVDRV
QVMVMDEADKLLSQDFVVLIEEIISYLPKNRQILLYSATFPISVQKFMSKHLQKPYEINL
MDELTLKGITQFYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYS
CFYIHAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLH
RIGRSGRFGHLGLAINLITSEDRFNLKSIEDQLVTEIKPIPSSIDKSLYVAEYHSELHGQ
EPRDGALEEQP
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgccaggaccgagaaccctaccccgatgctgatgggactgagcaaacagaac
gggcagctgagaggacagcaaaagtcggctccccctcagtcaggaccccctgggatcggg
cacccagtcaagccccctcacctgctgcagagcgctgcccctcagaaggctggagctcct
cagaacagtggagggatcaggttcggggatgactggaagaagaatctccagctccctcca
aaggatatgagaatcaggacttcagatgtaacttccacaaaaggcaacgagtttgaagat
tactgtttgaaacgggagctgctgatgggaatcttcgagatgggctgggagaagccctcg
cccattcaggaggagagcatgcccattgcgctgtccggccgggacattctggccagagcc
aaaaacgggacgggcaagagcggcgcctacctcatcccgcttctggaacggctggacctg
aagaaggacaatatccaggcgatcgtcatggttcccactcgcgagctcgctctgcaggtc
agtcagatctgcatccagatcagcaaacacatgggagaggtcaaggtgatggccaccaca
ggagggactaacctgcgtgatgacatcatgagactggacgagaccgtccatgtgatcatc
gccacgcccggcagaattgtggacctgattaagaaaggagttgccaaagtggaccgggtc
caggtgatggtgatggatgaggctgacaagctcctgtctcaggactttgtggtcctaatt
gaggagatcatcagctacctccccaaaaacagacagatcctgctctactctgccaccttc
cccatcagcgtccagaaattcatgagcaagcacctgcagaagccctatgagattaacctg
atggacgagctcactctgaaaggcatcactcagttctacgcctacgtgacggagaggcag
aaagtgcactgcctgaacactctcttctccaggctgcaaattaaccagtcgatcatcttc
tgcaactcgacccagcgagtggagcttctggccaaaaaaatcactcagctgggctactcc
tgcttctacatccacgccaagatgatgcaggagtacagaaaccgcgtgttccacgacttc
agaaacggattgtgtagaaacctggtgtgcacagatctgttcacgagaggcatcgatatc
caggcagtgaacgtggtaatcaacttcgacttcccaaagaacgcagagacgtacctgcac
cgcatcggccgatcagggcgttttggtcacctgggtctggcgatcaacctgatcacatcg
gaggatcgcttcaacctgaaatccatcgaggaccagctggtgacggagatcaagcccatc
ccgagcagcatcgacaagagcctgtacgtggcggagtaccactcagagctgcacgggcag
gagccccgcgacggggcgctggaggagcagccctaa
DBGET
integrated database retrieval system
