Polyodon spathula (Mississippi paddlefish): 121299465
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Entry
121299465 CDS
T07273
Name
(RefSeq) RING-type E3 ubiquitin-protein ligase PPIL2-like
KO
K10598
peptidyl-prolyl cis-trans isomerase-like 2 [EC:
5.2.1.8
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121299465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121299465
03110 Chaperones and folding catalysts [BR:
pspa03110
]
121299465
04121 Ubiquitin system [BR:
pspa04121
]
121299465
Enzymes [BR:
pspa01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.8 peptidylprolyl isomerase
121299465
Spliceosome [BR:
pspa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121299465
Complex C
U4/U6.U5 tri-SnRNP related factors
121299465
Other splicing related proteins
Minor spliceosome components
Minor spliceosome associated proteins
121299465
Chaperones and folding catalysts [BR:
pspa03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
121299465
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
U-box type E3
121299465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pro_isomerase
Rtf2
zf-NOSIP
U-box
Type_III_YscX
Motif
Other DBs
NCBI-GeneID:
121299465
NCBI-ProteinID:
XP_041083108
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All DBs
Position
25:22314528..22340733
Genome browser
AA seq
532 aa
AA seq
DB search
MGKRQHQKDKMYITCAEYTHLYGGKKAEIPKSSFRRLPFDHCSLSLQPFEYPMCTPEGHV
FDLLSIVPWVKKFGTNPATGEKLEAKSLVKLNFFKNNEGKYHCPVLYTVFTDNSHIVANM
KTGNVFSHEAVEQLNIKTKTYRDLLSDEPFARKDLITLQDPTNLDKFNVSNFFHVQNNMK
VTDPDEEKAKLHPEYHLKTTNLETRETLAELYKDYKGDELLASTMKPAEKKNTDKLNAAH
YSTGKVSASFTSTAMTPETIQEADAVADDTVRYQYVKKKGYVRLHTNKGDLNLELHCDMV
PKACENFIKLCKKEYYDGTVFHRSIRNFMIQGGDPTGTGTGGESFWGKPFKDEFKPNLSH
KGRGVLSMANSGPNTNKSQFFITFRSCTYLDRKHTVFGRVVGGFETLTALENVESDPKTD
RPKSEIKLLNATVFVDPYEEADVQIAAEREKTLQEEAEEKAKANAVLPKSKDSQAPKTYR
PGVGKYINTVTTKRTASAEDSGPSTSGASASAAASASKKLKGKTGFGDFSSW
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaaggcagcaccaaaaagacaaaatgtacatcacgtgtgcagagtacacccat
ttgtacggaggaaagaaagcagaaattcccaagtccagtttcagacgtttgccttttgat
cactgcagtttgtctctgcagccgtttgagtaccccatgtgcacacctgaagggcatgtc
ttcgacctcctgagtatagtgccgtgggttaagaagtttggaaccaacccagccactgga
gagaaactggaagcgaaatcacttgtcaaactgaacttcttcaaaaacaatgaaggaaaa
taccactgccccgtcctctacacagtgttcacagacaactctcacatcgtcgccaacatg
aaaactggaaacgtgttttctcacgaggcggtggaacagctcaacatcaaaaccaaaact
tacagggacctgctgtcggacgaaccctttgcaaggaaagatctcattactttgcaggat
cctacaaacctggacaagttcaacgtgtcaaactttttccacgttcagaacaatatgaaa
gttacagatccagatgaggagaaggccaagctgcacccggagtaccacctcaaaaccacc
aatctggagactcgggagactctggcggagctctataaagactacaaaggggacgagctg
ctggcctccaccatgaagcctgccgagaagaagaacaccgacaaactgaacgcggctcac
tactccacaggaaaagtttcagcttcctttacctccaccgcaatgacacctgaaacaatc
caggaagcagatgctgttgcggatgacactgtgcgttatcagtatgtaaagaagaaagga
tacgtgcggctacacaccaataagggggacctgaatttggagctacactgcgacatggta
ccgaaagcatgtgaaaacttcattaaactgtgcaagaaagaatactacgatggcaccgtc
tttcacagatccatccggaactttatgattcaaggaggggatcccacgggaacagggaca
ggtggggagtcattctggggaaaacctttcaaagatgaattcaaacccaacctctcgcac
aagggccgcggggtcctcagcatggcaaactcgggaccaaataccaataaatcgcaattc
ttcatcacatttcgttcctgcacctatctggacaggaagcacacagtgtttgggagagtg
gttgggggttttgaaacactaactgcattggaaaacgtggagagtgaccccaaaacagac
cgcccaaagtcagagattaaacttctgaatgcaacagtctttgtggatccctatgaggag
gcagatgtccagattgcagccgagagggagaagactcttcaggaggaggcagaggagaaa
gccaaagcgaatgccgtccttccaaagagcaaggacagccaggccccaaagacctaccgg
cccggcgtgggcaaatacatcaacacagttacaactaagaggacggccagtgccgaggac
agtggcccctcgaccagcggagcctctgcctcggcagctgcttcagcaagcaagaagctg
aagggaaagacgggcttcggggacttcagctcctggtag
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