Polyodon spathula (Mississippi paddlefish): 121299605
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Entry
121299605 CDS
T07273
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03030
DNA replication
pspa03410
Base excision repair
pspa03420
Nucleotide excision repair
pspa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121299605
03410 Base excision repair
121299605
03420 Nucleotide excision repair
121299605
03430 Mismatch repair
121299605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspa03032
]
121299605
03036 Chromosome and associated proteins [BR:
pspa03036
]
121299605
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121299605
DNA replication proteins [BR:
pspa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121299605
DNA Replication Termination Factors
ELG1-RFC complex
121299605
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121299605
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121299605
Check point factors
HRAD17(Rad24)-RFC complex
121299605
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_22
AAA_lid_RFC1
RuvB_N
AAA_assoc_2
AAA_14
ResIII
DEAD
AAA_16
PhoH
DUF815
AAA_7
AAA_24
ATPase_2
AAA_19
AAA_5
TIP49
AAA_30
nSTAND_NTPase5
Thioredoxin_6
nSTAND3
DNAX_ATPase_lid
AAA_2
bpMoxR
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
121299605
NCBI-ProteinID:
XP_041083361
LinkDB
All DBs
Position
25:21172354..21180543
Genome browser
AA seq
334 aa
AA seq
DB search
MTSTCKSQLQSRNLPWVEKYRPQTLKDLISHQDILGTIQRFISEERLPHLLFYGPPGTGK
TSTILACAKQLYKEKEFNSMVLELNASDDRGIDVVRGPILSFSSTRTIFNRGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKVIPALQSRCTRFRFGPLTQEQMVPRL
EYVIEQESVDVTPDGMKAIVTLSNGDMRRSLNILQSTSMAYGTVSEDTVYTCTGHPLKSD
IANILDWMLNQDFSTAYNNIMELKTLKGLALHDVLTEIHLLVHRVDFPASVRIHLLIKMA
NIEHRLASGTSEKIQLSSMIAAFQVARDMVAAEA
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaacttgcaaaagccagttgcaatctaggaaccttccatgggtggaaaaatat
cgaccgcagacgttgaaagacttgatctcgcatcaggacattctaggaacaattcagcgc
tttatcagtgaagagaggctcccgcatctcctgttttatgggcctcccgggactgggaag
acctctaccatcctggcttgtgccaagcagctttacaaggagaaagagttcaactccatg
gtcctggagctcaatgcatcagatgacagaggtattgatgttgttcggggtccgattctc
agcttctccagcaccaggaccatctttaatcgaggatttaaactagttatactggacgaa
gcagacgccatgacccaggatgctcagaatgctttgagaagagtgattgagaagttcacc
gagaacaccaggttttgcttgatctgtaactacctgtcaaaggtcattcctgcactgcag
tctcgatgcacgaggttccggttcggccccctgacccaggagcagatggtgccccgactg
gaatatgttatagagcaggaaagtgttgatgtaaccccagatggaatgaaggctattgtg
accctgtctaatggtgacatgcgtcgatcactcaacattttacagagtaccagcatggct
tatggaacagtgagtgaggatacagtgtacacctgcacaggtcaccctctgaagtcagac
attgctaacattctggactggatgctgaaccaggatttctccacagcgtacaataacatc
atggagctgaaaacactgaagggcttggcgttgcatgacgtgctgacagagatccacctg
ttggtgcacagagttgattttccagcttcagttcgaatccatttactcatcaagatggca
aacattgagcacaggcttgcgtctgggacgagcgagaagatccagctgagctccatgatc
gcagcgtttcaggtggcgcgggacatggtggcagctgaagcctga
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integrated database retrieval system
