KEGG   Polyodon spathula (Mississippi paddlefish): 121299672
Entry
121299672         CDS       T07273                                 
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like
  KO
K10652  tripartite motif-containing protein 25 [EC:2.3.2.27]
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04622  RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    121299672
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pspa04121]
    121299672
Enzymes [BR:pspa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     121299672
Ubiquitin system [BR:pspa04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    121299672
SSDB
Motif
Pfam: PRY SPRY zf-RING_UBOX zf-C3HC4_4 zf-C3HC4 zf-C3HC4_3 zf-C3HC4_2 zf-RING_2 RING_XB3-XBAT31 zf-RING_5 ANCHR-like_BBOX zf-RING_4 U-box zf-Nse zf-ANAPC11 zf-RING_6 SLX9
Other DBs
NCBI-GeneID: 121299672
NCBI-ProteinID: XP_041083497
LinkDB
Position
25:3139423..3143257
AA seq 583 aa
MAYSTAESLFREDLSCPICLQLFSEPVMLPCGHNFCASCIEGVIEGEAGRGQHTCPECRS
EYKGQTALQRNFKLCSIVEGFKASEGASSPVLCDMCLETPDPAVRTCLKCEISMCALHLK
PHLEKKTFESHSLVEPKSDLGVKACPVYEEVGKFDCFEDKSCTVKGKLKKYNLKKACSEM
KGGLQSKIKIMTETLQQAQSFFEKGVVNGISVKAADVKNGQTESAEVKVDLESEIVKKIH
LAESLLQKGKKNKASVKVSSAELKQNVSGLFDRIAQLVCTYKEGMVEMIEDEQRYLVESL
ERSTDYITKQQHLCREIQQQADSVSAETDQFQFIQKHQQIQAKLKAALETPLNEKDVTSQ
AMHNKKLLESLERAFVEFQAEIRNSHQDLKVLIYPSELTLDPHTAHCALSLSDDLKTARY
TTTKQPYPDLPERFDHWRQVLCFQGFSSGEHYWEVDTGEGFWHVGICYRSMARKGSGTDS
KLGCNKASWTVELHGKLSAWHKNVCTRLQVSTEPTRLGVHLNYDAGTLTFLSVSDKQTYL
HTFRTRFTEPVYPAFWIQSGTATSWVTVRSTSDRDFQTYANAS
NT seq 1752 nt   +upstreamnt  +downstreamnt
atggcgtattctaccgcagaaagtctctttcgagaagacctgagctgccccatctgcttg
cagctcttttcagagccggttatgcttccctgtggtcacaacttctgtgcttcgtgtatc
gagggagtgattgaaggagaagctgggagaggacagcacacctgccctgaatgtcggagt
gagtacaaagggcaaactgcactgcagagaaacttcaagctttgcagtattgtggaggga
ttcaaagccagtgagggtgcctcctctccagtgctctgtgatatgtgcttggagacccca
gacccagctgtcaggacgtgtctcaagtgcgagatctcaatgtgtgctctccatttaaaa
ccgcatttggaaaaaaagacatttgaaagccactccttggtggagcccaagtccgacctc
ggtgtcaaagcatgtccagtgtatgaagaggttgggaagtttgattgctttgaagacaag
tcctgcaccgtcaaaggtaagctcaagaaatacaatttgaaaaaagcttgttctgaaatg
aagggtggactccagtcaaagataaaaataatgacagagacgcttcagcaagcgcagagc
ttcttcgagaagggggtcgtcaacggaatatcagttaaagctgccgatgtgaaaaatggc
caaactgaatctgctgaagtgaaggtggacctggaatcagagattgtaaagaaaatacat
ctagcggagagccttctccagaaggggaaaaagaataaagcctctgtgaaagtttcaagc
gcagaattgaaacagaatgtgtcgggcctgttcgacaggatcgctcaacttgtttgcact
tacaaggaagggatggtagaaatgatagaagacgaacagcgctaccttgtggagagcctg
gagcgcagcactgactatatcacaaagcagcagcatctctgcagagagatccagcagcaa
gcggactctgtctcggccgaaacggaccaattccagttcattcagaagcaccagcaaatc
caagcaaaactaaaagcagcgctggaaacccctttaaacgagaaagacgttaccagtcaa
gcgatgcacaacaagaaactccttgaaagtctggaaagggcatttgttgagtttcaagcc
gaaattagaaattcacaccaggatctgaaggttttgatttacccctcagagctcacgcta
gacccgcacacagcccactgtgcgctgtctctctctgacgatctcaagactgccaggtac
actactacgaaacaaccttacccggatctcccagagaggtttgatcattggcgtcaggtc
ctgtgtttccagggcttctcgtccggagaacactactgggaggtggacactggggagggc
ttttggcatgtgggaatctgctacaggagcatggcaaggaaaggcagtgggacggattct
aaattagggtgcaataaggcatcctggactgttgagctgcatgggaagctgtctgcttgg
cataaaaatgtgtgcactcgccttcaggtgtccaccgagcccaccaggcttggagtgcac
ctcaattatgatgcagggactctgacatttctcagtgtgtctgacaaacagacttatctg
cacacatttagaacaagattcacagaacccgtttatccagcgttctggattcaatccggc
acagccacgtcctgggtaactgtaaggagtacttcagacagggactttcaaacatacgca
aatgctagctag

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