Polyodon spathula (Mississippi paddlefish): 121299672
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Entry
121299672 CDS
T07273
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121299672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121299672
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121299672
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121299672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
RING_XB3-XBAT31
zf-RING_5
ANCHR-like_BBOX
zf-RING_4
U-box
zf-Nse
zf-ANAPC11
zf-RING_6
SLX9
Motif
Other DBs
NCBI-GeneID:
121299672
NCBI-ProteinID:
XP_041083497
LinkDB
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Position
25:3139423..3143257
Genome browser
AA seq
583 aa
AA seq
DB search
MAYSTAESLFREDLSCPICLQLFSEPVMLPCGHNFCASCIEGVIEGEAGRGQHTCPECRS
EYKGQTALQRNFKLCSIVEGFKASEGASSPVLCDMCLETPDPAVRTCLKCEISMCALHLK
PHLEKKTFESHSLVEPKSDLGVKACPVYEEVGKFDCFEDKSCTVKGKLKKYNLKKACSEM
KGGLQSKIKIMTETLQQAQSFFEKGVVNGISVKAADVKNGQTESAEVKVDLESEIVKKIH
LAESLLQKGKKNKASVKVSSAELKQNVSGLFDRIAQLVCTYKEGMVEMIEDEQRYLVESL
ERSTDYITKQQHLCREIQQQADSVSAETDQFQFIQKHQQIQAKLKAALETPLNEKDVTSQ
AMHNKKLLESLERAFVEFQAEIRNSHQDLKVLIYPSELTLDPHTAHCALSLSDDLKTARY
TTTKQPYPDLPERFDHWRQVLCFQGFSSGEHYWEVDTGEGFWHVGICYRSMARKGSGTDS
KLGCNKASWTVELHGKLSAWHKNVCTRLQVSTEPTRLGVHLNYDAGTLTFLSVSDKQTYL
HTFRTRFTEPVYPAFWIQSGTATSWVTVRSTSDRDFQTYANAS
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcgtattctaccgcagaaagtctctttcgagaagacctgagctgccccatctgcttg
cagctcttttcagagccggttatgcttccctgtggtcacaacttctgtgcttcgtgtatc
gagggagtgattgaaggagaagctgggagaggacagcacacctgccctgaatgtcggagt
gagtacaaagggcaaactgcactgcagagaaacttcaagctttgcagtattgtggaggga
ttcaaagccagtgagggtgcctcctctccagtgctctgtgatatgtgcttggagacccca
gacccagctgtcaggacgtgtctcaagtgcgagatctcaatgtgtgctctccatttaaaa
ccgcatttggaaaaaaagacatttgaaagccactccttggtggagcccaagtccgacctc
ggtgtcaaagcatgtccagtgtatgaagaggttgggaagtttgattgctttgaagacaag
tcctgcaccgtcaaaggtaagctcaagaaatacaatttgaaaaaagcttgttctgaaatg
aagggtggactccagtcaaagataaaaataatgacagagacgcttcagcaagcgcagagc
ttcttcgagaagggggtcgtcaacggaatatcagttaaagctgccgatgtgaaaaatggc
caaactgaatctgctgaagtgaaggtggacctggaatcagagattgtaaagaaaatacat
ctagcggagagccttctccagaaggggaaaaagaataaagcctctgtgaaagtttcaagc
gcagaattgaaacagaatgtgtcgggcctgttcgacaggatcgctcaacttgtttgcact
tacaaggaagggatggtagaaatgatagaagacgaacagcgctaccttgtggagagcctg
gagcgcagcactgactatatcacaaagcagcagcatctctgcagagagatccagcagcaa
gcggactctgtctcggccgaaacggaccaattccagttcattcagaagcaccagcaaatc
caagcaaaactaaaagcagcgctggaaacccctttaaacgagaaagacgttaccagtcaa
gcgatgcacaacaagaaactccttgaaagtctggaaagggcatttgttgagtttcaagcc
gaaattagaaattcacaccaggatctgaaggttttgatttacccctcagagctcacgcta
gacccgcacacagcccactgtgcgctgtctctctctgacgatctcaagactgccaggtac
actactacgaaacaaccttacccggatctcccagagaggtttgatcattggcgtcaggtc
ctgtgtttccagggcttctcgtccggagaacactactgggaggtggacactggggagggc
ttttggcatgtgggaatctgctacaggagcatggcaaggaaaggcagtgggacggattct
aaattagggtgcaataaggcatcctggactgttgagctgcatgggaagctgtctgcttgg
cataaaaatgtgtgcactcgccttcaggtgtccaccgagcccaccaggcttggagtgcac
ctcaattatgatgcagggactctgacatttctcagtgtgtctgacaaacagacttatctg
cacacatttagaacaagattcacagaacccgtttatccagcgttctggattcaatccggc
acagccacgtcctgggtaactgtaaggagtacttcagacagggactttcaaacatacgca
aatgctagctag
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