Polyodon spathula (Mississippi paddlefish): 121299686
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Entry
121299686 CDS
T07273
Name
(RefSeq) transitional endoplasmic reticulum ATPase isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04137
Mitophagy - animal
pspa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121299686
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121299686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121299686
03009 Ribosome biogenesis [BR:
pspa03009
]
121299686
04131 Membrane trafficking [BR:
pspa04131
]
121299686
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121299686
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
121299686
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
121299686
Membrane trafficking [BR:
pspa04131
]
SNARE
SNARE associated proteins
Others
121299686
Autophagy
Aggrephagy
Other aggrephagy associated proteins
121299686
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121299686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
TIP49
AAA_22
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
ATPase_2
IstB_IS21
AAA_18
AAA_7
DUF815
ABC_tran
AAA_24
NB-ARC
TsaE
ResIII
Sigma54_activat
NACHT
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
121299686
NCBI-ProteinID:
XP_041083537
LinkDB
All DBs
Position
2:complement(69416636..69427711)
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGDSKSDDLSTAILKQKSRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLLK
GKKRRESVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNIFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPNISWEDIG
GLEDVKRELQELVQYPVEHPEKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRISILKAN
LRKSPISKDVDVDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPTSNQGG
AGPSQGSAGGTGGTVFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcagggggagattccaaaagtgacgatctttccactgcgattttaaaacagaag
agcagaccgaacaggctgattgtggatgagtctatcaatgaggataacagcgtggtttcg
ctttctcaggcgaagatggatgagctgcagctgttcaggggagacactgtgttgctgaag
gggaagaagaggcgtgagagtgtgtgcatcgtcctctccgatgatacctgctcagatgag
aaagtgcgcatgaacagggtcgttcgcaataacctgagggtccggctgggggatgtcatc
agcatccagccatgcccggatgtgaagtatggtaaacgtatccatgtcctccccattgac
gacactgtggaggggatcactggtaacatctttgaggtttatctcaagccatacttcctg
gaggcgtacaggcccatcaggaaaggagatattttcctggtacgaggaggaatgcgagct
gtggaattcaaggtggtggagacagaccccagcccatactgcatagtggctcctgacact
gtgattcactgtgagggagagcccattaagagagaggatgaggaggagtctctcaatgaa
gttgggtacgatgacatcggaggagtgaggaaacagctggcccagattaaggagatggtg
gagctccctctcagacatcctgcacttttcaaggctattggagtcaagcctccacgtggt
attctgttgtatggaccccctggtactggcaagaccctgattgctcgagctgtggctaat
gagactggagctttcttcttcctcattaatggtcctgaaattatgagcaaactagctgga
gagtctgagagcaacctgagaaaagcatttgaagaagctgagaagaacgccccggccatc
atcttcattgatgagctggatgccatagcaccaaagagagagaagactcacggtgaggtg
gagcggcgcattgtttctcagctgttgactctgatggacggtttgaagcagagggcacat
gtcattgtcatggcagctaccaacaggccaaacagcattgacccagccctcaggcgattt
ggtcgctttgacagagaggtggatattggtattcctgatgccacgggacgactggaaatc
ctgcagattcacacaaagaatatgaaactggctgacgatgttgacctcgaacaggttgct
aatgagacccatggtcacgtgggtgctgatctggctgctctctgctcggaggctgctctg
caggctatcaggaagaagatggacctcatcgacctggaagatgagaccattgatgcagag
gtcatgaactcgcttgcagtcaccatggatgacttcaggtgggccctgagccagagcaat
ccatcagccttgcgtgagactgtggtggaggtgccaaatatctcctgggaagatattggt
ggtttggaggatgtcaagagagaactgcaggagcttgtacagtacccagtggagcatcca
gagaagttcctaaagtttggtatgaccccctccaaaggcgtgctgttctatgggcctcct
ggttgtggtaagactctgctggccaaagccattgccaacgagtgccaggccaacttcatc
tccatcaaggggcctgagctgcttaccatgtggttcggagagtctgaggccaatgtgcgc
gagatcttcgacaaggcccgtcaagctgccccctgtgtcttgttcttcgacgagctggat
tccattgctaaggctcgcggtgggaatgttggggatggcggcggagcggcagacagagtc
atcaaccagatcctgacggagatggacggcatgtccagcaagaagaacgtcttcatcatt
ggggccaccaacagacctgacattattgacccagccatcctgcgacccggccgactggac
cagctcatctacatccccctgcccgacgagaagtcccgtatttccatcctcaaggccaac
ctcaggaagtctcccatttccaaggatgtagatgtggatttcctggccaagatgaccaat
ggcttctctggagctgacttgacagagatctgccagcgcgcctgcaagctagccatcaga
gagtccattgagaatgagatccgacgggaacgtgagaggcagaccaacccttctgccatg
gaggtagaggaggatgaccccgttcctgagattcgcaaggatcatttcgaggaggccatg
cgctttgctcgccgctctgtcagcgacaatgacatccgcaagtacgagatgttcgcacag
accttgcagcagagccgtggatttggcagtttcagattccccaccagtaaccagggaggt
gctggaccaagccagggctctgctggaggcaccggtggcacagtcttcaacgaggacaat
gatgatgacctgtacggttaa
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