Polyodon spathula (Mississippi paddlefish): 121299806
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Entry
121299806 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 13-like
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121299806
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
121299806
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
121299806
NCBI-ProteinID:
XP_041083830
LinkDB
All DBs
Position
25:complement(14483065..14606658)
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AA seq
2098 aa
AA seq
DB search
MTAAANWVANGASLEDCHSNLFSLAELTGIKWRRYSFHGNGECGPVISAPAQDDPILRSF
TRCVHANLLCVWRRDVKPDAKELWIFWWGEDPNLADIIHHELEVAEEGLWESGLSYECRT
LLFKAIHNLLERCLMDKSFVRIGKWFVKPYEKDEKTVNNSEHLSCAFTFFLHGESNVCTS
VEIAQHQPVYLINEEHITIAQSRAAPCQVILSPYGLSGTLTGQAYKMSDPAARKLMEEWC
YFYPMVLRRRESERADGEPGYDNSSHVAVEVIVGGVRMVYPSAFVLIAQSDLPVAQPSPS
AGMRDPTGCSIPLTPPSSPEQTCTGDSGIQTAISSLPGQEPGIVTSPKHSGRKLANQTVQ
QVWKECYRNRTQHKRTLSGSTTPEEEVPAWGFTDLVERVPCCCSRHKLQKQRQITAVGRT
PSNPQPGCNPTPPAAPSLPPPTPLKHKAADKPEKIDKQPKKQALIPFHHRPLFCEELCLD
QDPRAGPKLGSIDPPTEVPPDRKYSKQLPPPGKALDSPPHSPASPLPPTLSPHPRGQDSD
GREPGVGLPMYQELLPGRRLPDLSETALYVPPLCSGKEGGGWWRGYKTPNAEDSEFRTPE
LLPDCGELKMEAVTEGAALKRLFAQPHKRFKMCEERVREQVQTGTEGLGDPCDPYTFVDG
EIEYSFTASKRGRGQSQERDPCRKTKAEDGNSTPVPDGKDAMSIFSSAPKSEEPQEDSAA
AKAILNPSLTRETDLVVLISDLENIFDNSDSDELGTSSPTRRSLKATALGFEDRPLGKDG
RTTVPYHPTVADLQRMFPTPPSLEQHPAFSPVMTYRDALGSEPANLASMETPLSMLASAP
LCAFRMEVEEGMASPKPEEIKDFSFVFRPPQVQPLIGSSMFAPLRTLPSQCLPPIKIPES
CCYRPPWSVPPKIEQLPLIPHGPFSRDGYVNVPSVGSLMEQDYIQMNTPQTSTPAAVNSA
ASASNTAIQPSPSPATPRFSVPTPRTPRTPRTPRGGGAASGQGSVKYDGTDFCSPASTPS
TSRPLSSVEPSALAPLPEAHSLYVVLILSDSVLNIFKDRNFDSCCICACNMNVKGADVGL
YIPDSTREDQYRCMCGFSAIVNRRLAHAAGLFLEDELDIFGRGSEMGQAAERRLSLCRRT
SPLGDPASKRPQDPSAALLVLLQEQCSQPLSSLSSLDLLATCSCPGRQGALSQSWAAEKL
WADGSDSCVECFNALEQGQQYVDNPAGGKVDQALVRSSALHDWPHNSVLDVSALSSQDVV
RMLLSLQPFLQDAIQKKRTGRTWENIQHVQGPLTWQQFHKMAGRGSYGSEESPEPLPIPT
LLVGYDRDFLALSPLALPFWEKLLLEPYGGQRDTAFLVVCPDSEALISGAKSFFRDLSSV
YEACRLGQHRPLAKVSRDGLVRVGSLSPQRLDEVPVDEWFSQPWGSNGDEDNLTKLRLYA
HTCRHQLAPQLAALTLDSTLLLPPKPQPPTAPPTGQSAPSSLPSAPLPTGHTSTHTPPAP
PAPGPPPPQSRTTAGQTGTERPQENSLNTEAENGQSLAPPATGQQESQESSAERERIGIP
TEPESADSHAHPPSIVVYVVDPFQNEAAEEAEPGSVWLLGLLRCYTDILQSLPDTLKPAL
VLQLVPCQYLLQPVKDERSHYIQHLRSLAFSTYSQCRRLLPTQIHIKSLTGFGPAATIDT
VLKNTERPSPLQLYSPPFVLGPMRNRQLEMGEAAGEAAQRYSVLLVGYCLSHDQRWLLVS
CTDLHGDLLETCVINIDVPNRARRTKVSARKMGLQKVWEWCVGIIQMTSQPWRIVIGRLG
RLGHGELKDWSILLGECSLQSISRQLKETCRMCGISACDSPSILSACLVAMEPQGSFVVM
PDAVTMGSVFGRSTALNLQTSQLNTPQDASCTHILVFPTSATTQVAPGTYPIEDNQDDMF
DIPFPDELESDIGNDMMLITSSPVPSPGSPSGIGGGSHFQHSRSQGERLLSREAPEELKQ
QPLALGYYVSTAKADNLPQWFWASCPQAQYQCPLFLKASLHHHISVAHTDELILNKNSQR
TPHPLDSKTTSDVLRFVLEQYNSLSWLTCSPATQDRRSCLPVHFVVLTQMYNAILNML
NT seq
6297 nt
NT seq
+upstream
nt +downstream
nt
atgactgctgcagcgaactgggtggctaacggggcgagccttgaggactgccattccaac
ctcttttctctggcagagctgaccggtatcaaatggcgtcggtacagtttccatgggaac
ggggagtgcggcccggtgatctcggcgccggcccaggacgaccccatcctgcgcagcttc
acgcgctgtgtccacgccaacctgctctgcgtgtggcgccgggacgtcaaacccgacgcc
aaggagctgtggatcttctggtggggtgaggaccccaacctcgctgacatcatccaccat
gagctggaggtggcggaggaggggctgtgggagagtgggctgtcttacgagtgcaggacg
ctcctcttcaaggccatccataaccttctggagaggtgcctcatggacaaaagctttgtg
cggattgggaagtggtttgtcaagccatacgagaaggacgagaaaactgtgaataacagt
gagcacctgtcctgcgcattcacgttcttcctgcacggtgaaagcaatgtctgcacaagt
gtggagatcgctcagcaccagccggtgtacctgatcaatgaagagcacatcaccattgcc
cagagcagagccgccccctgccaagtgattctgagcccctatgggctgagcgggaccctc
actggccaggcctacaagatgtctgacccggcggcccgcaagctgatggaggagtggtgc
tacttctaccccatggtgctgcgcaggagggagagcgagcgggccgacggggagccaggc
tacgacaacagcagccacgtggcggtcgaggtcattgtgggtggtgtgcggatggtgtac
ccctctgcctttgtgctcattgctcagagcgatctccctgtggctcagccctcccccagc
gcaggaatgcgggaccccacaggctgcagcatccccctgactccccccagctccccagag
cagacctgcacaggtgacagtgggatccagacagcgatcagcagcctgccgggacaggag
ccgggcatcgtgaccagccccaagcattcggggagaaaactggccaaccagactgttcag
caggtgtggaaggagtgctaccggaacagaacacagcacaagaggaccttgtctggcagc
acaacccccgaggaggaagtgccagcgtggggcttcaccgacctggtggagcgagtgccc
tgctgctgttccagacacaagctacagaagcagcgccaaatcactgcagtaggccgcacc
ccctcgaatcctcagcctggctgcaaccccacccctcctgctgccccctccctcccccct
cccacacccctcaagcacaaggcagccgacaaacccgagaagatagacaaacaacccaag
aaacaggcactgatccccttccaccatcgccccctcttctgtgaagagctctgcctggat
caggaccccagagctggacccaagctgggatccatagacccccccactgaggttccccct
gaccgcaagtactccaagcagctcccccctcccggtaaagcccttgattcccccccgcac
tccccggcctcccctctgccccccaccctcagcccgcaccctcgggggcaggactcggat
gggcgggagcctggtgtgggtctgcccatgtaccaggagctcctaccaggccgcaggctg
cccgatctgagtgagacggctctgtatgtgcccccgctgtgctccggcaaggagggggga
ggctggtggagaggctacaagacccctaacgcagaggactctgagttcagaacccctgaa
ctgcttcccgactgcggagagttaaaaatggaggctgtgactgagggggctgccctgaaa
aggctcttcgctcagccccacaagcgtttcaagatgtgtgaggagcgtgtccgtgagcag
gtgcagacggggaccgaggggctgggggacccctgtgacccctacacctttgtggatgga
gagatagagtacagcttcaccgccagcaagagaggaagagggcagagccaggagagagac
ccctgcaggaagacaaaggcggaagatggcaactctaccccagtgcctgatgggaaagac
gctatgtcaatttttagctctgctcccaagtcagaagagccacaggaggacagtgctgcg
gccaaagccatcctcaaccccagcctgaccagggagaccgaccttgtggtcctcatctct
gacctggagaacatattcgacaactcagactcggacgagctggggacctcttccccaaca
cgccggtccttgaaggccaccgccttgggatttgaagatcgccccctagggaaagacggt
agaactactgtgccatatcatccaacagtggcagatcttcagcgcatgttccccacgccc
ccctctctggagcagcaccctgccttctctcctgtcatgacgtaccgggatgctctgggc
tcagagcctgccaaccttgccagcatggagacccccttgagcatgctcgccagcgccccc
ctctgtgccttcaggatggaggtggaggaaggcatggccagccccaagccagaggagatc
aaggacttttcctttgtgttccggccgccccaagtgcagcccctgattgggtcgtccatg
tttgcccccctgcggaccctccccagccagtgcctcccacccatcaagatcccagagtcc
tgctgctaccggccgccctggtccgtgccccccaagatcgaacagctgcccctgattcca
cacggccctttcagtcgagatggatatgtcaatgtgcctagcgtgggaagcctgatggag
caggactacattcagatgaacacgccccagaccagcacaccagcagcagttaacagtgca
gcctctgccagcaacactgccatccagccctccccctccccagccactcctcgcttctct
gtgcccacccctcgcaccccccgcacgccccgcacgcccaggggaggtggggctgccagc
gggcaggggtcagttaagtacgatggaacggatttctgctccccagcctccactccctcc
actagccgaccgcttagctctgtggagccctcggctctggcccctctgcctgaggcacac
agcctgtacgtggtgctcatcctgtctgactctgtgctcaacatcttcaaggaccgcaac
ttcgacagctgctgcatctgcgcctgtaacatgaacgtgaagggggccgacgtggggctg
tacatccctgactccacacgggaagaccagtaccgctgcatgtgcggcttcagcgccatc
gtcaaccgtcgccttgctcatgccgcgggcctcttcctggaagacgagctggatatcttc
ggccggggctcggagatgggccaagcggctgagaggagactgtcactgtgccgcaggacc
tccccgcttggagaccctgccagcaagcgtcctcaagacccctccgcggctctgttggtg
ctgctgcaggagcagtgctcccagcccctctcctccctcagctccctggacctcctcgcc
acctgctcctgccccggacgccagggggctctctcgcagagctgggctgctgagaagctg
tgggcggacgggagtgactcttgtgtggagtgttttaatgcgctggagcaggggcagcag
tatgtggataacccggctgggggcaaagtggaccaggcccttgtgaggagcagtgctctg
catgactggcctcataatagcgtgctggatgtcagcgcgctgtcctcacaggacgtggtg
cgcatgctgttgtccctgcagcccttcctgcaggacgccatccagaagaaaaggaccggc
cgaacctgggagaacatccagcacgtgcagggcccgctcacctggcagcaattccacaag
atggccggccgtggctcctacggttcggaggagtccccagagccgctccccatccccact
ctgctggtgggctatgaccgggacttcctggctctgtcccccttggccctgcccttctgg
gagaagctgctgctggagccatatgggggccagagagacaccgccttcctagtggtgtgt
cccgacagtgaggccctgatcagcggggccaagagcttcttcagggacctgagctctgtc
tacgaggcctgccggctggggcagcatcggccccttgccaaagtttcccgggacggtctg
gtgcgtgtgggctccctgtcaccacagcgcttggatgaagtgccagtggatgagtggttc
agtcagccctgggggagcaatggggatgaggacaacctgaccaaacttcggctctacgca
cacacctgcagacaccaactggcacctcagcttgcagcgctgacactagacagcaccctg
ctcctgcctcccaaacctcagcccccaacggcaccccctacaggccagtccgcgccaagc
tccctgccatctgctccactgcccacaggacatacttccacccatacccccccagcccca
cccgcgccggggccccccccaccccagtccaggaccactgcagggcagacagggaccgag
cgcccccaggagaactccctgaacacagaggctgagaatgggcagagcctggctccacca
gcaacagggcaacaggagagccaggagagctctgcagagagggagcgaatcggaatcccc
acagagcctgagtcggcagacagccacgcccacccgccgtcgatcgtggtttacgtggtg
gaccccttccagaatgaggctgccgaggaggcggagcctggcagtgtgtggctgctggga
ctgctgcgctgctacactgacatcctgcagagcctgcctgacaccctgaaaccagcccta
gtactgcagctggtgccctgccagtacctgcttcagcctgtgaaggatgagcgctcccac
tacatccagcacctgcgatcgctggccttctctacctactcacagtgccggcgcctgctc
cccacgcagatacacatcaagagcctcaccggcttcggacctgcagccaccatcgacact
gtgctcaagaacacagagcggcccagtcctctgcagctgtactctccccccttcgtgctg
ggacccatgcggaaccggcagctggagatgggggaggcagcgggggaggctgctcagcgc
tacagtgttctcttggtggggtactgcctgtcccatgaccagcgctggctgctggtttcc
tgcacagacctgcacggggatctgctggagacctgcgttatcaacatcgacgtgccaaac
cgggctcgcaggacgaaggtttctgccaggaagatgggcttgcagaaggtgtgggagtgg
tgtgtgggcatcatccagatgacatcacagccatggaggatagtgattggccggttgggg
cgtctgggtcatggagaacttaaggactggagtatcctcctgggagagtgctctcttcag
tccattagtcggcagctcaaagagacatgtcggatgtgtggtatctcagcctgcgactcc
ccctctatcctgagtgcctgcctggtcgccatggagccccagggatccttcgtcgtgatg
ccagacgcagtgaccatgggctctgtgttcggccgcagcactgccctcaacctgcagacc
tctcagctcaacaccccgcaggatgcctcttgcacgcacatcctggtcttccccacctct
gccaccacccaggtggcacctgggacctaccccatagaagacaaccaagatgacatgttt
gacatcccgttcccggacgagctagagagcgacattgggaatgacatgatgctgatcacc
tcctcccctgtaccgtccccagggtccccctcggggatcgggggaggctcccacttccag
cacagccggagtcaaggagagaggctgctgtcccgggaggccccagaggagctcaagcag
cagccgctggctctcggctactatgtctccactgccaaggctgacaacctaccgcagtgg
ttctgggcatcctgcccgcaggcacagtaccagtgcccgctctttctcaaggcttccctt
caccaccacatctcggtagctcacacagacgagctcatcttgaacaagaactcccaaagg
accccccacccactcgactctaagaccacctctgatgtgttgaggtttgtcctggagcag
tacaactccctttcctggctcacctgcagccctgccacccaggaccgccgttcctgcctg
cccgtccactttgtggtcctcacacagatgtacaatgccatcctgaacatgctttag
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