Polyodon spathula (Mississippi paddlefish): 121299857
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Entry
121299857 CDS
T07273
Name
(RefSeq) ATP-dependent RNA helicase DDX54-like
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pspa03009
]
121299857
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121299857
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
Pre-60S particles
Helicases
121299857
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
DNA_pol3_chi
DUF1421
Motif
Other DBs
NCBI-GeneID:
121299857
NCBI-ProteinID:
XP_041083949
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All DBs
Position
25:complement(13351689..13368499)
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AA seq
857 aa
AA seq
DB search
MAQRKKRFTKKRRHLNRDPDVDSDGGEFELAAEVSEEDDSRKAGRTVPGFPTADCISDVE
PDTRELVRAQNKKKKKSGGFQSMGLGYPVYKGVMKKGYKVPTPIQRRTIPLILDGKDVVA
MARTGSGKTAAFLIPMFERLKAPSAQTGARALILSPTRELALQTMKFTKELGKFCGFKTA
LILGGDRMDDQFAALHENPDIIIGTPGRLMHVVVEMNLKLHSVEYVVFDEADRLFEMGFA
EQLQGVIQRLPENRQTVLFSATLPKLLVEFARAGLTEPVLVRLDVDTKLNDQLKLAFFHL
RVDDKPALLLHLLRNVMKPQEQTVVFVATRHHVEYLKELLVSEGMDCAYIYSALDQTARK
INIGKFVHRKVMVMIVTDVAARGIDIPMLDNVINYNFPSKAKLFLHRVGRVARAGRSGTA
YSLVAPDEMAYVFDLHLFLGRPLQLAGPRHNQPDEDGVCGRVPQSILDDEEAMLVTAHEN
SLDLQNMRRISDNAYMQYLKSRPNPSPESVKRVKETDFSSLAVHPLLGSVLENVELERLK
VVDSIKQYKSRATIFEINATNKTTAGEVMRAKRSRDMRLVDKFQKSRKDKATESLLGRSA
ASLPRAESDEDSIQNVFSEVLGGKRKTPQSEMDAPNKRAKEAGRDEEFYIPYRPKDFDSE
RGLSMQGEGSTFEQQASGAVLDLMGDEGDKMNQHKHMMKWDRKKKRFVRETGKGDKKKTV
RIESGQLVSKSFKKNFYEEWKKKYKVEDGVSDNESGGEGGGSRARTAGGGGRGGRGGRRG
GRGAPIPPRQTPVQKSRPELKSRDQILKQRKKKQKQQFLQSGGLQKLRSKNQPRLHEMKR
SGFGRGAVKKGKLRKKL
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaaggaagaagaggtttactaaaaagagacgacatctgaaccgggatcccgat
gtggattcggacggtggggagttcgagttggcggccgaggtcagcgaggaagacgattcc
agaaaggctggcaggacggtcccaggcttccccacagcagactgcatttctgatgtggag
ccggacaccagggagctcgttcgggcccagaacaagaagaagaagaaatccggaggcttc
cagtccatggggctgggttatcctgtttacaaaggggtgatgaagaagggatataaagtc
ccaacaccaattcagaggaggaccatcccgctgatcctagatggtaaggatgtggtggcg
atggcccgcacgggaagtgggaagacagctgcgttcctcatccccatgtttgagcgactg
aaggctcccagtgcccaaacaggtgcccgtgctctcatcctgtcacccacccgcgagctg
gcactgcagaccatgaagttcaccaaggagcttggcaagttttgtggcttcaagactgca
ctgattctcggaggagacagaatggatgaccagtttgctgccttgcacgagaatcctgat
ataatcattggcacaccgggtcgtctgatgcacgtggtcgttgagatgaacctgaagctg
cacagtgtggagtatgtggtgtttgatgaagctgacaggctgtttgagatgggctttgca
gagcagctgcagggggttatccagcgactgccagagaaccgtcagaccgtgctgttctct
gccactctgcccaagctgctggttgagtttgcccgtgcaggtttaacagaaccagtttta
gttcgactcgatgtggacaccaaactgaatgaccagctgaagcttgcgtttttccatctg
agggtggatgataagccggctctgctgttgcacttgctgaggaacgtgatgaagccgcag
gaacagacagtggtgttcgtagccaccaggcaccatgtggagtacctgaaagagttgttg
gtgtcggaggggatggactgtgcatacatctacagcgccctggaccagacggccaggaag
atcaacattgggaagtttgtgcacaggaaggtgatggtgatgatagtgacagacgtagcg
gctcgcgggatagacatccccatgctcgacaacgtcatcaactacaacttcccctccaaa
gccaagctgttcctgcacagagttggtcgagtggcgagagcagggaggagtggtacagca
tacagcctggtggccccagatgagatggcctacgtgtttgacctgcacctcttcctaggg
cgccccctgcaacttgcagggcccaggcacaaccagccagatgaggacggcgtgtgtggg
cgagtgccgcagagtatcctggacgatgaggaggctatgctggtgacggctcacgagaac
tcgttggacctgcagaacatgcgccgcatctctgacaatgcctacatgcagtacctaaag
tcccggcccaacccctcgcccgagtcagtcaagagagtcaaggagacagacttctccagc
ctcgcagtccaccccctcctcggttctgtgctagaaaatgtggagttggagagactgaag
gtggttgacagcatcaaacaatataaatccagagcaacaattttcgagatcaatgcgacc
aataagaccacagcgggtgaggtgatgcgagcaaagaggagtcgagacatgcgactggtc
gacaagttccagaaatctcgcaaggacaaggcaacggagagcttgctgggccggtctgct
gccagcctgccgcgggcagagtcagacgaggatagcatccagaatgtgttttcagaagtg
cttggtggcaagaggaagacgccacagagtgaaatggacgctcccaacaagcgagccaag
gaggcagggcgtgatgaagagttttacatcccgtaccgacccaaggacttcgactctgag
agagggctcagtatgcaaggagaaggcagcacattcgagcagcaggcatcgggggcagtc
ctggacctcatgggggacgaaggggacaagatgaaccagcacaagcacatgatgaaatgg
gaccgcaagaagaagcgctttgtgagggagacggggaagggggacaagaaaaagaccgtg
aggattgagagcggtcagcttgtcagcaaatccttcaagaaaaacttctacgaggagtgg
aagaagaaatacaaggtggaggacggagtgtctgacaacgaatcaggaggagagggaggt
ggcagccgggccaggacagcgggagggggaggtagaggaggcagaggaggcaggaggggc
ggcagaggagcccccatcccaccgagacagaccccggtgcagaagtcccgtccggagctg
aagagccgcgatcagatcctgaagcagcgcaagaagaagcagaagcaacagttcctgcag
agcgggggcctccagaagcttcggagcaagaaccagccgcgcctgcatgagatgaagagg
tccggcttcgggaggggcgccgtcaaaaaaggcaagctgcgcaagaagctgtga
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