Polyodon spathula (Mississippi paddlefish): 121299861
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Entry
121299861 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM33-like isoform X1
KO
K08883
tripartite motif-containing protein 33 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pspa01001
]
121299861
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121299861
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121299861
Protein kinases [BR:
pspa01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
121299861
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121299861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
PHD-1st_NSD
EOS1
Motif
Other DBs
NCBI-GeneID:
121299861
NCBI-ProteinID:
XP_041083951
LinkDB
All DBs
Position
25:complement(4038177..4059705)
Genome browser
AA seq
1198 aa
AA seq
DB search
MAENKGGGDGESPENNTPALTEEDPPAPAGKEDESPVTSEPAASGAEARSPEESEQAPSG
GVESAASGNGSPGAAAPPGSGEAEDVPAREAEEGSAREIEVLSVREADVLSAQDTDVVCV
EVVPAPAPPATAVESPSPILTAPAAPPAPALPINLLDTCTVCKQSLQNRDCEPKLLPCLH
SFCLRCIPQPERQLSLQLPGPHGQEIQLVNVMRCPVCRQEFKQTDLVDNYFVKDTSEVSS
GSDENSAQVCTSCDDNAGAVGFCVECGEWLCKTCIEAHQRVKFTKDHVIRRKDDVSAEPV
GTSGQRAVFCPIHKQEALKLFCETCDRLTCRDCQLQEHKEHRYQFLEEAFQNQKGIIETF
MAKLQEKKNYVHFASSQVQSRIKEVNETHKKVEHEIKVAVFTLINEINKKGKSLLQQLES
VTKERNVKLMHQQRDITSLSQQIMHVLSFANWAICSGSSTALLYSKRLITFQLRHILKAR
CDPVPSANGAVRFFCDPTFWAKNVVNLGNLVIETKPIPVHAPNMVVGQVPNAQNHAGKHL
GQINLAQLRLQHMQQQQQQAAYAQKQQQQQLQLQQQQMQQQQMQQQQQQQQQQQLRMVQH
LPPHPRQGGPQMVQQQQPPRLISMQAMQRAGMNGAAYQAHQMRLAQSQNQNRMPGVPRHN
GQQYPMMQPQLQRQVTSDPDGLGGSLGRHSNPGHAGPFPVASLHNSAANPTSPTTASMAH
AHRGPTSPCVSTIELIPSVTNPENLPCLPDIPPIQLEDAGSSSLDNLLSRYIFASQLPQA
PLTNMIPSPGPSALSPGSAGISNSHTPVRPSSTSSTGSRGSRPQSLCSCSSGRTMPVADA
VKVKQEPGTEEECGFSGAVVKQERVEDGRRSACMMSSPESSRTPPLAAPSSTPQEPAPLR
TLEEHVKEEPKEAAGSCRQQVETTVTNGKGSVRSFLHRPPRAATATAHSSEHKDDDPNED
WCAVCQNGGDLLCCDKCPKVFHLTCHVPTLLSFPSGEWICTFCRNLAKPEVEYNCDNLQH
KKKGKTVHGLSPTDQRKCERLLLYIFCHELSIEFHEPVSASIPNYYKIIKKPMELATVKK
KLQMKHSQHYQTPQDFVADVRLIFKNCAKYNEMSRIIQVYDEKTQINLQAESEVAQAGKA
VALYFEEKLKEIYGDQNFPPHPEEEPEEDEEVTEDSDDDFVQPRRKRLKSEEKPLHIK
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaacaaaggcggaggggacggcgagagccccgaaaataacaccccagctctg
actgaagaggacccccctgccccggccgggaaagaagacgagagcccggtgaccagcgag
cccgcggcgagcggagcggaggcccggagccccgaggagagcgagcaggctccgagcgga
ggagtggagagcgccgccagcgggaacggcagccccggggccgcggcacccccgggctcc
ggcgaggctgaggacgtgcctgcccgggaggccgaggagggctctgcccgggagattgag
gtgctgtctgtccgggaggctgacgtgctgtctgcccaggacaccgacgtggtgtgcgtg
gaggtggtgccagccccagctcctccggcgactgcagtggagtctccctctcccatcctc
accgcgccggcggctcccccggccccggctctcccgatcaacctgctggatacgtgcacg
gtgtgcaagcagagcctgcagaaccgggactgcgagcccaagctcctgccgtgtctgcat
tccttctgtctgcgctgcatccctcaaccggagcgccagctcagcttgcagctaccgggc
ccgcacgggcaggagattcagctcgtgaacgtgatgcggtgcccagtgtgccggcaggag
ttcaagcagaccgacctggtagataattactttgtgaaagatacctcggaggtctccagc
ggctcggatgagaattcagcgcaggtgtgtacgagctgtgacgacaatgctggcgccgtg
ggcttctgtgtggagtgcggggagtggctctgcaaaacctgcatagaggcccatcagaga
gtcaagttcaccaaggaccacgtgatcaggaggaaagatgacgtctctgctgaaccagtg
ggaacctcagggcagcgggctgtgttctgcccgatccacaagcaggaagctctaaagctg
ttctgcgagacttgtgaccggctgacttgcagagactgtcagctgcaggagcacaaggag
cacagataccagtttttggaggaagcttttcagaaccagaaagggataatcgagaccttc
atggctaagcttcaggagaagaagaattacgtccactttgcttcctctcaggtgcagagc
aggataaaggaagttaacgaaactcataagaaagtggaacatgaaatcaaagtggctgtt
ttcaccctcatcaatgaaatcaacaaaaagggaaaatcactattgcagcagttggagagt
gtgacaaaggagcgcaatgtcaagctgatgcaccagcagcgtgacatcaccagcctgtcc
cagcagatcatgcacgtgctcagcttcgccaactgggccatctgcagcgggagcagcact
gcgcttctctacagcaagagactgataacgttccagctgcggcacattctgaaggctcga
tgtgaccccgtcccttcggcgaatggagctgtgcgcttcttctgtgaccccaccttctgg
gcaaagaacgtcgtcaatctgggtaacctggtgatcgagaccaagccaattcctgtccac
gccccgaacatggtagtgggtcaggttcctaatgcgcagaaccacgcagggaagcacctg
gggcagatcaacctggctcagctgcggctgcagcacatgcagcagcagcagcagcaggct
gcctatgcgcagaagcagcagcaacagcagttacagctccagcagcaacagatgcagcag
caacaaatgcaacagcagcagcagcagcagcagcagcagcagctgcgcatggtgcagcac
ttgcctccgcacccacggcagggggggccgcagatggtccagcagcagcagcctccccgg
cttatcagcatgcaagccatgcagagagccggtatgaatggagccgcctaccaggcacac
cagatgcgactggcccagagccagaaccagaaccgcatgccaggcgtcccgcggcacaac
ggccagcagtatcccatgatgcagccgcagctccagagacaggtgacgtctgaccccgat
gggcttgggggctctttaggaaggcattccaacccaggccacgccggcccgttccctgtc
gcttcactccacaacagcgctgccaacccaaccagccccaccaccgccagcatggcccac
gcccaccgcggaccaaccagcccctgcgtctccaccatcgagctcatcccctctgtgacc
aaccctgagaacctgccctgcttgccggacatcccgcccatacagctggaagatgctggc
tcgagtagtctagacaatctcctgagcagatacatcttcgccagccaacttcctcaagct
cccctgaccaatatgatcccatctcccggaccctccgctctgtctccagggtctgcaggc
atttctaattcacacacaccagtgaggccctccagtacctccagcacagggagcagaggc
agtcgccctcaatccctttgcagctgttcgtcggggcggaccatgccagtggcggacgcg
gtgaaggtcaagcaggagccggggacggaggaggagtgtggcttttcgggggcggtggtc
aagcaggagcgggttgaagacggccgcaggagcgcctgcatgatgagcagcccggagagc
agccggactcccccgctggctgccccgtcctcgaccccccaggaaccggccccgctgcgg
accctggaggagcacgtcaaggaggagcccaaggaggcggcggggagctgccggcagcag
gtggagacgaccgtgacaaacggcaagggctccgtgcgcagcttcctgcaccgccctccc
cgagccgccaccgccaccgcacacagcagcgagcacaaggacgacgaccccaacgaggac
tggtgcgccgtctgtcagaacgggggcgacctgctctgctgcgacaagtgccccaaagtc
tttcacctcacctgccacgttcctaccctgctcagcttccccagcggagagtggatctgt
accttctgcagaaacctggccaaacctgaggttgagtacaactgtgacaatctgcagcac
aaaaagaaggggaaaaccgtgcatgggctcagccctacggaccagaggaagtgcgagcgt
ctcctcctctacatcttctgtcacgagttgagcatcgagttccacgagccagtctcggct
tctatacccaattactacaagatcattaagaagcctatggaactggccacggtgaagaag
aaactccagatgaagcactctcagcactaccagaccccccaggacttcgtggccgacgtg
cgcttgatcttcaagaactgtgcaaaatacaatgaaatgtctcgaattatccaagtttat
gatgagaaaacccagattaatttgcaggctgaatctgaggtggctcaggctggcaaagcg
gtggcattgtacttcgaggagaaactcaaggagatttacggggatcagaacttccctcct
cacccagaggaggagccggaggaggacgaggaagtcacagaagattccgacgacgatttt
gtccagccgcggcgcaagcgattaaaatcggaagagaagccgctacacatcaaatga
DBGET
integrated database retrieval system
