Polyodon spathula (Mississippi paddlefish): 121299905
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Entry
121299905 CDS
T07273
Name
(RefSeq) clathrin heavy chain 1-like
KO
K04646
clathrin heavy chain
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04142
Lysosome
pspa04144
Endocytosis
pspa05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121299905
04142 Lysosome
121299905
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
121299905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121299905
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121299905
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
121299905
Exosome [BR:
pspa04147
]
Exosomal proteins
Proteins found in most exosomes
121299905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
Gp18_dom_I
capSnatchArena
Motif
Other DBs
NCBI-GeneID:
121299905
NCBI-ProteinID:
XP_041084065
LinkDB
All DBs
Position
25:complement(22634105..22659531)
Genome browser
AA seq
1673 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGVNPANIGFSYLTMESDKFICIREKVGDQAQVVIIDMSDPTT
PIRRPISADSAIMNPTSSSIALQAAKTLQIFNIEMKSKMKAHTMTEEVMFWKWISVNTVA
LVTETAVYHWSMEGDSQPLKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAAFADFKIEGNAKPSTLFCFAVRSPAGGKLHIIEVGQPAAGN
QPFAKKAVDVFFPPEAQTDFPVAMQIGTKHGVIYLITKYGYIHMYDLESGVCIYMNRISA
ETIFVTAAHEPTSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLGLRMAIRSNLAGA
EELFARKFNTLFTQGNYSEAAKVAASAPKGILRTADTIRKFQGVPAQPGQASPLLQYFGI
LLDQGQLNKFESLELCRPVLGQGRKQLLEKWLKEDKLECSEELGDLVKTADPTLALSVYL
RANVPSKVIQCFAETGQFQKIVLYAKKVGYTPDWVFLLRNVMRVSPDQGLQFSQMLVQDE
EPLANINQIVDVFMENNLVQQCTSFLLDALKNNRPAEGHLQTRLLEMNLVHAPQVADAIL
GNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGALSV
EDSVECLRAMLSSNIRQNLQLCVQVASKYHEQLGTQSLVELFESFKSYEGLFYFLGSIVN
FSQDPDVHFKYIQAACKTGQIKEVERICRESSCYDPDRVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQF
STDELVAEVEKRNRLKLLLPWLESRIHEACEEPATHNALAKIYIDSNNNPERFLRENTFY
DSSVVGKYCEKRDPHLACVAYERGECDLELIKVCNENSLFKSEARYLVRRKDPELWANVL
EENNPFRRQLIDQVVQTALSETQDPEEVSVSVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AIQVLIEHIGNLDRAYEFAERCNEPAVWSQLARAQLQKDLVKEAIDSYIKADDPSAYMEV
VQAAGKNSNWEDLVKFLQMARKKARESYVETELIFALAKTNRLSELEEFVSGPNNAHIQQ
VGDRCYDDGMYDAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKASSTRTWKEVCFAC
VDGLEFRLAQICGLHIVIHADELEELISYYQDRGYFEELIALLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN
HPSDAWKEGQFKDIIAKVANVELYYKALQFYLDYKPLLINDLLVVLSPRLDHTRAVSFFA
KMNQLQLVKPYLRSVQNHNNKGVNESLNNLLTEEEDYQGLRASIDAYDNFDNISLAQRLE
KHELIEFRRIAAFLYKGNNRWKQSVELCKKDRLYKDAMQYAAESKDTELAENLLQWFLEE
GKRECFASCLFTSYDLLHPDVVLELAWRHDIMDFAMPYFIQVMREYLTKVDKLEETESLR
KTEEEVAEPTPIVFGQQLMLTAGSSPVPPPAGYPAYGYAAPGFASQSAYGYNM
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatacttccaatacgatttcaggaacatctgcagttgcagaacctgggggtg
aacccagccaacattggcttcagctacctgacgatggagtctgacaagttcatctgtatt
cgggagaaggtaggagaccaggcccaggtggttatcatcgacatgagtgaccccacgacc
ccaatcaggcgccccatttctgcagacagtgccataatgaatccgaccagcagttctatt
gccctccaagctgcaaaaactctacagatctttaacattgagatgaagagtaaaatgaaa
gctcacacaatgacagaagaggtaatgttctggaaatggatctctgtgaacactgttgcc
ttggtaacggagacagcagtctatcactggagcatggagggtgactcccagcccttgaag
gtgtttgacagacatgccagtttagcaggatgccagatcatcaactaccgaactgacgag
cagcagaaatggctgcttctgattggaatctctgcacagcaaaaccgtgtggtaggtgcc
atgcagctgtactctgtagacaggaaagtgtcccagccaattgaagggcacgcagcagca
tttgctgacttcaagattgaaggaaatgccaaaccatcaactctcttctgctttgctgtt
cgcagtccggccggaggcaagctgcacattattgaagtaggtcagcctgcagctgggaac
caaccctttgctaaaaaagctgtggatgttttctttccccctgaggctcagactgacttt
cctgtggcaatgcagatcggaaccaagcacggtgtgatctatctcatcaccaagtatggc
tatatacacatgtatgacctggagtctggggtctgcatctacatgaaccgcatcagcgca
gagactatctttgtgactgccgcgcatgagcccacctctggaatcattggcgtcaataag
aaaggacaggtgctgtctgtgtgtgttgaggaagaaaacattgtgaactacgctaccaac
gtccttcagaacccagaccttggactgcgcatggccatccgcagcaacctggcaggcgct
gaggagctcttcgctcggaaattcaacacgctcttcactcaaggaaactactccgaggct
gccaaagtagctgcctctgcaccaaagggaatactgcgtactgcagataccattcggaaa
ttccagggtgtcccggcgcagcctggccaggcctctcctctgctccagtacttcggcatc
ctgctggatcaagggcagctgaataagtttgagtcgcttgaactgtgccgacccgttctg
gggcagggccggaaacagcttttagaaaaatggctgaaagaggacaagctggagtgctca
gaagagctgggcgacctggtaaagactgctgacccaaccctggctctcagtgtctacttg
cgtgccaatgtgcccagcaaggttattcagtgttttgctgaaactggacagtttcagaaa
attgtgctctatgctaaaaaggttggctacacaccagactgggttttcctgctgagaaac
gtgatgcgggtgagcccggaccagggattgcagttctctcagatgctggtccaggacgag
gagcctttagccaacatcaaccagattgtggatgtgttcatggagaacaacctggttcag
cagtgcacctcattcctgttggatgctctgaagaataaccgtcctgctgaaggacacctg
cagactcgacttctggaaatgaatcttgtacatgcgccacaggtagccgacgccattctt
ggaaaccagatgtttacacactatgaccgtgcccacgttgcacagctctgtgagaaggca
ggcctgctgcagcgagccctggagcactacacagacctgtatgatatcaaacgtgccgtc
gttcacacccatctcctgaacccggagtggctggtgaacttctttggggctctgtcagtg
gaagactctgtagaatgcctgcgagccatgctctcttcgaacatccggcaaaacctgcag
ctgtgtgtacaggtggcatccaagtaccacgagcagcttgggacgcagtccctggtggaa
ctgtttgagtcctttaagagctatgaaggactgttctatttcctgggctctattgtaaac
ttcagccaggacccggatgtgcatttcaaatacattcaagcagcctgcaaaacgggtcag
atcaaagaggtggagcggatctgccgggaaagcagctgttacgacccggaccgtgtcaag
aacttcctcaaggaagccaagttaactgaccagcttcctctaataattgtgtgtgatcgg
tttgacttcgttcacgacctggttctctacttgtaccgcaacagtctgcagaaatacatt
gaaatctacgtgcagaaggttaaccctagccgtcttccagtggtcattggaggcctgctt
gatgtggattgcgctgaagatgtgattaaaaacttgatcatggtggtgaggggacagttc
tccactgatgagctggtcgctgaagtggagaaaagaaaccggctgaagctgctgcttcct
tggctggaatcgagaatccatgaagcctgtgaagagcctgcaacccacaacgcgctcgcc
aaaatctacatcgacagcaacaacaacccggagcggttcctgcgcgagaacactttttac
gacagcagcgtggtcgggaaatactgtgaaaagagggacccgcacctcgcctgtgtagcc
tacgaaaggggggagtgtgatttggaactcatcaaggtttgcaatgagaactctctgttc
aagagtgaggctcgctaccttgtgcgcaggaaggacccagaactctgggcaaatgttctt
gaagagaacaacccattccgtcgtcagctgattgaccaggttgtgcagacagccctgtcg
gagacacaggacccagaggaggtgtctgtctctgtgaaagctttcatgacagccgacctt
cccaatgagctgattgagctgctggagaagattgtcctggataactctgtcttcagtgag
cacagaaacctacagaacctgctgatcctgactgccattaaagctgaccgcacccgggtt
atggagtatataaaccgcctggataactacgatgctcctgatattgcaaacatcgccatc
agcaacgagctgttcgaggaggcctttgccatcttcagaaagtttgatgtgaacacttcc
gctatccaggtgttgatagaacacattgggaatttggaccgtgcctatgaatttgcagag
cgctgtaatgagccggcagtgtggagccagctggccagggcacagctgcagaaagacctg
gtcaaggaagccattgactcttacatcaaagctgatgatccttctgcatacatggaagta
gtccaagcagctggcaaaaacagcaactgggaggacctggttaaattcctgcagatggcc
cgaaagaaagctagagagtcatacgtggaaacggaactgatctttgctttagcgaaaacg
aaccgtctctcagaactagaggaatttgtgagcgggccaaacaatgctcacatccagcaa
gttggcgatcgctgttacgatgacgggatgtacgacgcagccaagttgctttacaacaat
gtctctaactttgcccgcctggcctccacgctggtacacctgggagaataccaggctgca
gtggacagcgcccgcaaggccagcagcaccaggacctggaaggaggtttgctttgcctgc
gtggatgggttggagttccgcttggcacagatctgcggcttgcacattgtcatccacgct
gatgagctggaggaattgataagttactatcaggaccgtggctactttgaggagctaatt
gctctgctggaggcagcactgggcctggagcgggcgcacatgggaatgttcacagagctg
gccatcctgtactccaaattcaagcctcagaagatgagggagcacctggaactcttctgg
tccagagtcaatatcccgaaggtcctccgcgctgcagaacaggcacacctgtgggcagag
ctcgtcttcctctatgataaatatgaagagtatgataatgcaataataactatgatgaat
cacccctctgatgcttggaaggaagggcagttcaaagacatcattgctaaggtggcgaat
gtggagctgtattacaaagccctgcagttctatttggattacaaacccctgctgatcaat
gaccttctggtggtgctgtctcctcggcttgaccacaccagggcagttagtttctttgca
aagatgaaccagttgcagcttgttaagccttacctacgctcggtgcagaatcacaacaac
aaaggtgtgaacgagtctttaaataacctgcttactgaagaggaagattaccagggcctg
agagcctccatcgacgcttatgataactttgacaacatcagcctcgcccagagactagag
aagcatgaactgattgaattccgacgcatcgctgctttcctgtacaagggtaacaaccgc
tggaaacagagcgtggagctttgcaagaaagatcgtctctacaaggatgccatgcagtac
gctgctgagtccaaggacacggagctggcggagaatctgctgcagtggttcctggaggaa
ggtaaacgggaatgcttcgcttcctgtctcttcacatcctacgatctgctgcaccctgat
gtggtcctggagctggcttggaggcatgacatcatggactttgcaatgccttacttcatc
caagtaatgagggaataccttaccaaagtggataaactagaggagactgagagcctgcga
aagacagaggaggaagttgcagaaccaactccaatagtgtttggtcagcagctgatgttg
actgccggttccagtccggtccctcctcctgcaggatatccagcatatggatacgctgct
cctggctttgcctcccagtccgcctatggatacaatatgtaa
DBGET
integrated database retrieval system
