KEGG   Polyodon spathula (Mississippi paddlefish): 121299983
Entry
121299983         CDS       T07273                                 
Symbol
top3b
Name
(RefSeq) DNA topoisomerase 3-beta-1
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03440  Homologous recombination
pspa03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    121299983 (top3b)
   03460 Fanconi anemia pathway
    121299983 (top3b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pspa03032]
    121299983 (top3b)
   03400 DNA repair and recombination proteins [BR:pspa03400]
    121299983 (top3b)
Enzymes [BR:pspa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     121299983 (top3b)
DNA replication proteins [BR:pspa03032]
 Eukaryotic type
  DNA Topoisomerases
   121299983 (top3b)
DNA repair and recombination proteins [BR:pspa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     121299983 (top3b)
   FA (Fanconi anemia) pathway
     121299983 (top3b)
SSDB
Motif
Pfam: Topoisom_bac Zn_ribbon_TOP3B Toprim
Other DBs
NCBI-GeneID: 121299983
NCBI-ProteinID: XP_041084223
LinkDB
Position
25:complement(22387278..22402699)
AA seq 856 aa
MKTVLMVAEKPSLAQSIAKILSKGSCSSRKGLNGACSVHEYTGSFMGQSVRFKMTSVCGH
VMSLDFIGKYNNWDKVDPAELFSTAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDK
EGENICFEVLDAIQPVMNKAYGNESTVFRAKFSSITDTDICNAMNHLGEPNRNEALSVDA
RQELDLRIGCAFTRFQTKYFQGKYGNLDSALISFGPCQTPTLGFCVERHDKITSFKPEPY
WVVQTKVSRGTDVSLTLDWERVRVFDREVAQMFLNIVKTAREARVESVSKKEKVKQRPQA
LNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTHYPENFDLTGALRQQANS
PFWADSVKALLSEGINRPRKGTDAGDHPPITPMRSASESELGSDGWRLFDYITRHFIATL
SCDCKYLQTTIAFSVGTESFTCTGKTLISAGFTEVMPWLSIPDEESLPVCERGDLFTVDE
VKLLEKHTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGRRLKPTNL
GIVLVHGYYKTDAELVLPTIRSAVEKQLNLIAQGKAHFKQVLQYTLDIFKRKFHYFVDSI
ASMDELMEVSFSPIAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGAIKL
YKELRCPLDEFELVLWSTGSRGKSYPLCPYCYSNPPFRDMKKGMGCSECTHPTCQHSLNS
LGIGQCVECENGVLVFDPTSGPKWRMACNKCNVVVHFFENAHKVRVSSESCEACEASLVI
VDFNKARSPLPGDETQHTGCAFCEPVFQDLVELKHATMRHPMHRGGGGRRQGRGRGRRPG
PKKPKDKMAALAAYFV
NT seq 2571 nt   +upstreamnt  +downstreamnt
atgaagacggtgttgatggtggcagagaagccgtctttggcacagtccattgccaagata
ctttcaaaaggtagctgctccagccgcaagggcctcaacggagcatgttctgtgcatgaa
tacaccggctccttcatggggcaaagcgtgcgttttaagatgacctcggtgtgtggacat
gtgatgagcctggatttcatagggaagtataacaactgggacaaggtggacccagcggag
cttttcagcacagctccgacagagaagaaggaagccaaccccaaactcaacatggtcaag
tttttacaggttgaaggcagaggatgtgattatgttgtactctggctggactgtgacaaa
gaaggagaaaacatctgctttgaggtcctcgatgcaatccagcctgtaatgaacaaagcg
tacggcaatgagagcacagtgtttcgagccaagttcagctccatcacagacactgatatc
tgtaacgccatgaaccacctgggggagcccaaccgcaacgaggccttgtcagtggatgct
cggcaggagctggacctgcgcatcggctgtgctttcaccagatttcagaccaaatatttt
caaggaaagtatgggaacctggacagcgctctaatttccttcggtccctgccagacccca
accctgggcttctgcgtggagcgtcacgacaagatcacgtccttcaaaccagagccctac
tgggtggttcagacgaaggtctcgagaggcacagatgtgtctctgaccctggactgggag
agggtgcgagtgttcgacagggaggtggcgcagatgtttctcaacattgtgaagactgcc
cgggaagccagggtagagtctgtgagtaagaaggagaaggtgaagcagagaccccaggct
ttaaacactgttgaaatgttgcgtgttgcaagttcagcccttgggatgggccctcagcat
acaatgcagatagcggagagactgtacacacaaggctacatcagctaccctcgaacagag
accacccattaccctgagaacttcgacctcacaggagctctgcgtcagcaagcaaacagc
cctttctgggcagattcagtgaaagcattgctttctgaaggcatcaatcgacccagaaaa
gggactgatgctggagaccatccccccatcacacccatgagatctgcttcagagagcgag
ctaggaagtgatggatggcgactctttgactacatcaccaggcacttcattgccaccctc
agctgtgactgcaaatacctgcagaccaccatcgcgttcagcgtcggcacggaaagcttc
acatgcacagggaagactctcatatctgcgggctttactgaagtgatgccgtggctgagc
atcccggatgaggagagccttcctgtctgtgagagaggggacttgttcaccgtggatgag
gtgaagctcctggagaaacacaccagccccccggactacctgactgaggcagagctcatc
acactgatggagaagcacggcattgggactgatgccagtatcccagtgcacattaataac
atttgccagaggaattacgttactgtggagagcggacgccggcttaagccgaccaacctg
gggattgttcttgtccatggctattacaagacagatgcggaactggtgctgcccacgatc
cgcagcgctgtggagaagcagctgaacctgatcgctcaggggaaagcccatttcaagcag
gtcctgcagtacactctggatatcttcaagaggaagtttcattactttgtagattccatt
gctagcatggacgagctgatggaagtttccttctccccgatcgcagccacagggaagcct
ctgtcccgctgtggcaagtgccaccgtttcatgaagtatatccaggctaaaccgagcaga
ctgcactgctcccattgtgacgagacgtacagcctgccccagaacggcgccattaaactg
tacaaagagctgcgctgcccgctggacgagtttgagctggtgctgtggtccacgggctcc
aggggaaagagctacccgctgtgcccgtactgctacagcaacccccccttcagagacatg
aagaaaggcatgggctgcagcgagtgcacccaccccacctgccagcactccctgaacagc
ctggggatcggccagtgcgtggagtgcgagaacggggtgctggtcttcgaccccacctcg
gggcccaagtggaggatggcatgcaacaagtgcaacgtggtggtgcacttctttgaaaac
gcccacaaggtgcgggtctcctcggagagctgcgaggcgtgcgaggcgtcgctggtcatc
gtggacttcaacaaggccaggtcccctctcccgggggatgagacccagcacacaggctgt
gcgttctgcgagcccgtcttccaggacctggtggagctgaagcacgctaccatgaggcac
cccatgcatcgcgggggggggggcaggaggcagggccgcggccggggcaggagacccggc
cccaagaaacccaaagacaagatggcagccttggctgcgtacttcgtgtga

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