Polyodon spathula (Mississippi paddlefish): 121299983
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Entry
121299983 CDS
T07273
Symbol
top3b
Name
(RefSeq) DNA topoisomerase 3-beta-1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03440
Homologous recombination
pspa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121299983 (top3b)
03460 Fanconi anemia pathway
121299983 (top3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspa03032
]
121299983 (top3b)
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121299983 (top3b)
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
121299983 (top3b)
DNA replication proteins [BR:
pspa03032
]
Eukaryotic type
DNA Topoisomerases
121299983 (top3b)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
121299983 (top3b)
FA (Fanconi anemia) pathway
121299983 (top3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Motif
Other DBs
NCBI-GeneID:
121299983
NCBI-ProteinID:
XP_041084223
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Position
25:complement(22387278..22402699)
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AA seq
856 aa
AA seq
DB search
MKTVLMVAEKPSLAQSIAKILSKGSCSSRKGLNGACSVHEYTGSFMGQSVRFKMTSVCGH
VMSLDFIGKYNNWDKVDPAELFSTAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDK
EGENICFEVLDAIQPVMNKAYGNESTVFRAKFSSITDTDICNAMNHLGEPNRNEALSVDA
RQELDLRIGCAFTRFQTKYFQGKYGNLDSALISFGPCQTPTLGFCVERHDKITSFKPEPY
WVVQTKVSRGTDVSLTLDWERVRVFDREVAQMFLNIVKTAREARVESVSKKEKVKQRPQA
LNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTHYPENFDLTGALRQQANS
PFWADSVKALLSEGINRPRKGTDAGDHPPITPMRSASESELGSDGWRLFDYITRHFIATL
SCDCKYLQTTIAFSVGTESFTCTGKTLISAGFTEVMPWLSIPDEESLPVCERGDLFTVDE
VKLLEKHTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGRRLKPTNL
GIVLVHGYYKTDAELVLPTIRSAVEKQLNLIAQGKAHFKQVLQYTLDIFKRKFHYFVDSI
ASMDELMEVSFSPIAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGAIKL
YKELRCPLDEFELVLWSTGSRGKSYPLCPYCYSNPPFRDMKKGMGCSECTHPTCQHSLNS
LGIGQCVECENGVLVFDPTSGPKWRMACNKCNVVVHFFENAHKVRVSSESCEACEASLVI
VDFNKARSPLPGDETQHTGCAFCEPVFQDLVELKHATMRHPMHRGGGGRRQGRGRGRRPG
PKKPKDKMAALAAYFV
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgaagacggtgttgatggtggcagagaagccgtctttggcacagtccattgccaagata
ctttcaaaaggtagctgctccagccgcaagggcctcaacggagcatgttctgtgcatgaa
tacaccggctccttcatggggcaaagcgtgcgttttaagatgacctcggtgtgtggacat
gtgatgagcctggatttcatagggaagtataacaactgggacaaggtggacccagcggag
cttttcagcacagctccgacagagaagaaggaagccaaccccaaactcaacatggtcaag
tttttacaggttgaaggcagaggatgtgattatgttgtactctggctggactgtgacaaa
gaaggagaaaacatctgctttgaggtcctcgatgcaatccagcctgtaatgaacaaagcg
tacggcaatgagagcacagtgtttcgagccaagttcagctccatcacagacactgatatc
tgtaacgccatgaaccacctgggggagcccaaccgcaacgaggccttgtcagtggatgct
cggcaggagctggacctgcgcatcggctgtgctttcaccagatttcagaccaaatatttt
caaggaaagtatgggaacctggacagcgctctaatttccttcggtccctgccagacccca
accctgggcttctgcgtggagcgtcacgacaagatcacgtccttcaaaccagagccctac
tgggtggttcagacgaaggtctcgagaggcacagatgtgtctctgaccctggactgggag
agggtgcgagtgttcgacagggaggtggcgcagatgtttctcaacattgtgaagactgcc
cgggaagccagggtagagtctgtgagtaagaaggagaaggtgaagcagagaccccaggct
ttaaacactgttgaaatgttgcgtgttgcaagttcagcccttgggatgggccctcagcat
acaatgcagatagcggagagactgtacacacaaggctacatcagctaccctcgaacagag
accacccattaccctgagaacttcgacctcacaggagctctgcgtcagcaagcaaacagc
cctttctgggcagattcagtgaaagcattgctttctgaaggcatcaatcgacccagaaaa
gggactgatgctggagaccatccccccatcacacccatgagatctgcttcagagagcgag
ctaggaagtgatggatggcgactctttgactacatcaccaggcacttcattgccaccctc
agctgtgactgcaaatacctgcagaccaccatcgcgttcagcgtcggcacggaaagcttc
acatgcacagggaagactctcatatctgcgggctttactgaagtgatgccgtggctgagc
atcccggatgaggagagccttcctgtctgtgagagaggggacttgttcaccgtggatgag
gtgaagctcctggagaaacacaccagccccccggactacctgactgaggcagagctcatc
acactgatggagaagcacggcattgggactgatgccagtatcccagtgcacattaataac
atttgccagaggaattacgttactgtggagagcggacgccggcttaagccgaccaacctg
gggattgttcttgtccatggctattacaagacagatgcggaactggtgctgcccacgatc
cgcagcgctgtggagaagcagctgaacctgatcgctcaggggaaagcccatttcaagcag
gtcctgcagtacactctggatatcttcaagaggaagtttcattactttgtagattccatt
gctagcatggacgagctgatggaagtttccttctccccgatcgcagccacagggaagcct
ctgtcccgctgtggcaagtgccaccgtttcatgaagtatatccaggctaaaccgagcaga
ctgcactgctcccattgtgacgagacgtacagcctgccccagaacggcgccattaaactg
tacaaagagctgcgctgcccgctggacgagtttgagctggtgctgtggtccacgggctcc
aggggaaagagctacccgctgtgcccgtactgctacagcaacccccccttcagagacatg
aagaaaggcatgggctgcagcgagtgcacccaccccacctgccagcactccctgaacagc
ctggggatcggccagtgcgtggagtgcgagaacggggtgctggtcttcgaccccacctcg
gggcccaagtggaggatggcatgcaacaagtgcaacgtggtggtgcacttctttgaaaac
gcccacaaggtgcgggtctcctcggagagctgcgaggcgtgcgaggcgtcgctggtcatc
gtggacttcaacaaggccaggtcccctctcccgggggatgagacccagcacacaggctgt
gcgttctgcgagcccgtcttccaggacctggtggagctgaagcacgctaccatgaggcac
cccatgcatcgcgggggggggggcaggaggcagggccgcggccggggcaggagacccggc
cccaagaaacccaaagacaagatggcagccttggctgcgtacttcgtgtga
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