Polyodon spathula (Mississippi paddlefish): 121300000
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Entry
121300000 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM33-like
KO
K08883
tripartite motif-containing protein 33 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pspa01001
]
121300000
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121300000
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121300000
Protein kinases [BR:
pspa01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
121300000
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121300000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
PHD-1st_NSD
Motif
Other DBs
NCBI-GeneID:
121300000
NCBI-ProteinID:
XP_041084249
LinkDB
All DBs
Position
25:complement(1885253..1907079)
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AA seq
1172 aa
AA seq
DB search
MAENKGGGDGESPENNTPALTEEDPPAPAGKEDESPVTSEPAASGAEARSPEESEQAPSG
GVESAASGNGSPGAAAPPGSGEAEDVPAREAEEGSAREIEVLSVREADVLSAQDTDVVCV
EVVPAPAPPATAVESPSPILTAPAAPPAPALPINLLDTCTVCKQSLQNRDCEPKLLPCLH
SFCLRCIPQPERQLSLQLPGPHGQEIQLVNVMRCPVCRQEFKQTDLVDNYFVKDTSEVSS
GSDENSAQVCTSCDDNAGAVGFCVECGEWLCKTCIEAHQRVKFTKDHVIRRKDDVSAEPV
GTSGQRAVFCPIHKQEALKLFCETCDRLTCRDCQLQEHKEHRYQFLEEAFQNQKGIIETF
MAKLQEKKNYVHFASSQVQSRIKEVNETHKKVEHEIKVAVFTLINEINKKGKSLLQQLES
VTKERNVKLMHQQRDITSLSQQIMHVLSFANWAICSGSSTALLYSKRLITFQLRHILKAR
CDPVPSANGAVRFFCDPTFWAKNVVNLGNLVIETKPIPVHAPNVVVGQVPNAQNHAGKHL
GQINLAQLRLQHMQQQQQQAAYAQKQQQQQLQLQQQQMQQQQMQQQQQQQLRMVQHLPPH
PRQGGPQMVQQQPPRLISMQAMQRAGMNGAAYQAHQMRLAQSQNQNRMPGVPRHNGQQYP
MMQPQLQRQHSNPGHAGPFPVASLHNSAANPTSPTTASMAHAHRGPTSPCVSTIELIPSV
TNPENLPCLPDIPPIQLEDAGSSSLDNLLSRYIFASQLPQAPLTNMIPSPGPSALSPGSA
GISNSHTPVRPSSTSSTGSRGSCSSGRTMPVADAVKVKQEPGTEEECGFSGAVVKQERVE
DGRRSACMMSSPESSRTPPLAAPSSTPQEPAPLRTLEEHVKEEPKEAAGSCRQQVETTVT
NGKGSVRSFLHRPPRAATATAHSSEHKDDDPNEDWCAVCQNGGDLLCCDKCPKVFHLTCH
VPTLLSFPSGEWICTFCRNLTKPEVEYNCDNLQHKKKGKTVHGLSPTDQRKCERLLLYIF
CHELSIEFHEPVSASIPNYYKIIKKPMELATVKKKLQMKHSQHYQTPQDFVADVRLIFKN
CAKYNEMSRIIQVYDEKTQINLQAESEVAQAGKAVALYFEEKLKEIYGDQNFPPHPEEEP
EEDEEVTEDSDDDFVQPRRKRLKSEEKPLHIK
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaacaaaggcggaggggacggcgagagccccgaaaataacaccccagctctg
actgaagaggacccccctgccccggccgggaaagaagacgagagcccggtgaccagcgag
cccgcggcgagcggagcggaggcccggagccccgaggagagcgagcaggctccgagcgga
ggagtggagagcgccgccagcgggaacggcagccccggggccgcggcacccccgggctcc
ggcgaggctgaggacgtgcctgcccgggaggccgaggagggctctgcccgggagattgag
gtgctgtctgtccgggaggctgacgtgctgtctgcccaggacaccgacgtggtgtgcgtg
gaggtggtgccagccccagctcctccggcgactgcagtggagtctccctctcccatcctc
accgcgccggcggctcccccggccccggctctcccgatcaacctgctggatacgtgcacg
gtgtgcaagcagagcctgcagaaccgggactgcgagcccaagctcctgccgtgtctgcat
tccttctgtctgcgctgcatccctcaaccggagcgccagctcagcttgcagctaccgggc
ccgcacgggcaggagattcagctcgtgaatgtgatgcggtgcccagtgtgccggcaggag
ttcaagcagaccgacctggtagataattactttgtgaaagatacctctgaggtctccagc
ggctcggatgagaattcagcgcaggtgtgtacgagctgcgacgacaatgccggcgccgtg
ggcttctgtgtggagtgcggggagtggctctgcaaaacctgcatagaggcccatcagaga
gtcaagttcaccaaggaccatgtgatcaggaggaaagatgacgtctctgctgaaccagtg
ggaacctcagggcagcgggctgtgttctgcccgatccacaagcaggaagctctaaagctg
ttctgcgagacctgtgaccggctgacttgcagagactgtcagctgcaggagcacaaggag
cacagataccagtttttggaggaagcttttcagaaccagaaagggataatcgagaccttc
atggctaagcttcaggagaagaagaattacgtccactttgcttcctctcaggtgcagagc
aggataaaagaagttaacgaaactcataagaaagtggaacatgaaatcaaagtggctgtt
ttcaccctcatcaatgaaatcaacaaaaagggaaaatcactattgcagcagttggagagt
gtgacaaaggagcgcaatgtcaagctgatgcaccagcagcgtgacatcaccagcctgtcc
cagcagatcatgcacgtgctcagcttcgccaactgggccatctgcagcgggagcagcact
gcgcttctctacagcaagagactgataacgttccagctgcggcacattctgaaggctcga
tgtgaccctgtcccttcggcgaatggagctgtgcgcttcttctgtgaccccaccttctgg
gcaaagaacgttgtcaatctgggtaacctggtgatcgagaccaagccaattcctgtccac
gccccgaacgtggtagtgggtcaggttcctaatgcgcagaaccacgcagggaagcaccta
gggcagatcaacctggctcagctgcggctgcagcacatgcagcagcagcagcagcaggct
gcctatgcgcagaagcagcagcaacagcagttacagctccagcagcaacagatgcagcag
caacaaatgcaacagcagcagcagcagcagctgcgcatggtgcagcacttgcctccgcac
ccacggcagggggggccgcagatggtccagcagcagcctccccggcttatcagcatgcaa
gccatgcagagagccggtatgaatggagccgcctaccaggcacaccagatgcgactggcc
cagagccagaaccagaaccgcatgccaggcgtcccgcggcacaacggccagcagtacccc
atgatgcagccgcagctccagagacagcattccaacccaggccacgccggtccattcccc
gtcgcttcactccacaacagcgctgccaacccaaccagccccaccaccgccagcatggcc
cacgcccaccgcggaccaaccagcccctgcgtctccaccatcgagctcatcccctctgtg
accaaccctgagaacctgccctgcttgccggacatcccgcccatacagctggaagatgct
ggctcgagtagtctagacaatctcctgagcagatacatcttcgccagccaacttcctcaa
gctcccctgaccaatatgatcccatctcccggaccctccgctctgtctccagggtctgca
ggcatttctaattcacacacaccagtgaggccctccagtacctccagcacagggagcaga
ggcagctgttcgtcggggcggaccatgccagtggcggacgcggtgaaggtcaagcaggag
ccggggacggaggaggagtgtggcttttcgggggcggtggtcaagcaggagcgggttgaa
gacggccgcaggagcgcctgcatgatgagcagcccggagagcagccggactcccccgctg
gctgccccgtcctcgaccccccaggaaccggccccgctgcggaccctggaggagcacgtc
aaggaggagcccaaggaggcggcggggagctgccggcagcaggtggagacgaccgtgaca
aacggcaagggctccgtgcgcagcttcctgcaccgccctccccgagccgccaccgccacc
gcacacagcagcgagcacaaggacgacgaccccaacgaggactggtgcgccgtctgtcag
aacgggggcgacctgctctgctgcgacaagtgccccaaagtctttcacctcacctgccac
gttcctaccctgctcagcttccccagcggagagtggatctgtaccttctgcagaaacctg
accaaacctgaggttgagtacaactgtgacaatctgcagcacaaaaagaaggggaaaacc
gtgcacgggctcagccctacggaccagaggaagtgcgagcgtctcctcctctacatcttc
tgtcacgagctgagcatcgagttccacgagccagtctctgcttctatacccaattactac
aagatcattaagaagcctatggaactggccacggtgaagaagaaactccagatgaagcac
tctcagcactaccagaccccgcaggacttcgtggccgacgtgcgcttgatcttcaagaac
tgtgcaaaatacaatgaaatgtctcgaattatccaagtttatgatgagaaaacccagatt
aatttgcaggctgaatctgaggtggctcaggctggcaaagcggtggcattgtactttgag
gagaaactcaaggagatttacggggatcagaacttccctcctcacccagaggaggagccg
gaggaggacgaggaagtcacagaagattccgacgacgattttgtccagccgcggcgcaag
cgattaaaatcggaagagaagccgctacacatcaaatga
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