Polyodon spathula (Mississippi paddlefish): 121300005
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Entry
121300005 CDS
T07273
Name
(RefSeq) THO complex subunit 5 homolog isoform X1
KO
K13174
THO complex subunit 5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121300005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121300005
03041 Spliceosome [BR:
pspa03041
]
121300005
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
121300005
Spliceosome [BR:
pspa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121300005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
DUF2542
Motif
Other DBs
NCBI-GeneID:
121300005
NCBI-ProteinID:
XP_041084259
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All DBs
Position
25:14900495..14915941
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AA seq
684 aa
AA seq
DB search
MSADALKKRKPKVVRNEGGTPEGKRMRGEGDQEARVYSEEVELEMRNPAQDYTLYKQTCE
MLTRLMAEIHELKSSSSSKDSATEMEERRMQSCIHFMTLKKLNRVAHMRLKKGRDQTHEA
KQRVDALHLQLQNLLYEVMHLQKEINKCLEFKSKHEEIELVSVEEFTRDAPPEISRPEIS
AEDPHQLTLCRLDWELEQRKRLAEKYKESLASKEKIMKGIEIKKEYLSSLQPRLTEIMQA
SRPVQDYLSMPFEQTQKQNEVARHLPPPLYVLLVQANAYGQACDKKLSVSIIGDVNEAKA
LSKPPEDSQDDESDSDAEEEQNTKRRRPTLGVQLDDKRKEMLKRHPLSVNADLQCKDGSV
LHLFFYYLMNLDIMTVKVKVTTGTELSGAISAGELLSPESLLNCLYPGDQGTETPNPANR
YQFDKVGILMFGDYVAELGHPYTWVQNLGGLRFPTGRPEQAGPTGSSLSASHMEATMKLL
KSRLESRLALHKQFASLEHSILPVSNECQSLFPAKVVSRLIKWSTITYEEYAELPYTQQV
LEAGLVQETDLLFTAVIERGTAKLQAAVVLNPRYSTVPPLFSLSLSWKGERSGRTDDNLR
AMEAEVNVYHRELRGPHPGYQLLTNQLQRLCMCLDVFLETESQDESVEGPREFPREKMCL
RTVRGPNRLKPFKFNHPQGFFNHR
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcggacgcgctgaagaagaggaagcccaaggtggtccggaatgagggtggaaca
ccagaagggaagaggatgagaggagagggggaccaggaggcgcgagtgtacagtgaggag
gtggagctggagatgagaaaccctgcccaggactacactctgtacaagcagacctgcgag
atgctcaccaggctgatggctgagatccacgagctgaagagcagcagcagcagcaaggac
agcgcaaccgagatggaggaacgacgcatgcagagctgcatccacttcatgacgctaaag
aaactgaaccgtgtggctcacatgaggctcaagaagggccgggatcaaacccacgaggca
aagcagagagtggatgccctgcatctccagctccagaacctgctctatgaggtcatgcac
ctgcagaaagagatcaacaagtgcctggagttcaagtccaagcacgaggagattgagctg
gtgagtgtggaagagttcacacgggacgcccccccagagatctcccgccccgaaatctca
gccgaggacccacaccagctcaccctgtgccgtttggactgggagctggagcagaggaag
aggctggcagagaagtacaaggagtctctggccagcaaggagaagatcatgaagggcatt
gagatcaagaaggagtatctgagcagcctgcagccccggcttaccgaaatcatgcaggct
tcccggccagtccaggactacctgtctatgccttttgaacagactcagaaacagaacgag
gtggcgaggcacctgcccccgccactctacgtgctgctagtccaggccaacgcttatggg
caggcttgtgataagaagctgtcggtttcgatcattggagatgtaaatgaagcaaaggcc
ctctccaaacccccagaggactcccaggatgatgagagtgactctgatgctgaagaggaa
caaaatactaagagacggaggcccacactgggtgttcagctggatgataagcgcaaggag
atgttgaaacgccacccgttgtccgtcaacgctgacctccagtgtaaagacggcagtgtg
ttgcacctcttcttctattacctgatgaacctcgacatcatgacggtgaaagtgaaagtg
acaacggggactgagctgtccggggccatcagtgcaggagagcttctgagcccggagtcc
ctccttaactgcctgtaccctggggaccaaggtactgagacccccaatcctgccaaccgc
taccagtttgataaagttgggattctgatgttcggtgactatgtggctgagctgggacac
ccttacacctgggttcagaatctgggggggctgcgattccccactggcagacccgagcag
gcagggcccacaggcagctcgctcagtgccagccacatggaagccaccatgaagctcctg
aaaagccgactggagtcccgcctggctctgcacaagcagtttgcctccctcgagcacagc
attttgccagtgtctaatgagtgccagagtctcttcccagccaaggtggtttcaaggttg
atcaagtggagtaccatcacatacgaggagtatgcggagctgccctacacccaacaagtg
ctggaggccggactggtacaggagactgacctcctcttcacagctgtcatcgagaggggc
acagccaagctgcaggccgcagtggtcctgaaccctcgctactcaaccgtgccccccctc
ttcagcctttcactcagctggaaaggagagcgcagcgggcggactgacgacaatctccgg
gcgatggaggctgaggtgaatgtgtatcaccgggagctgcgtgggccccaccctgggtac
cagctcctgaccaatcagctgcagcggctgtgcatgtgcctggacgtgtttctggagacg
gagagccaggatgagagcgtggaggggccgcgcgagtttccccgtgagaagatgtgtctg
cgtactgtccgggggcccaatcggctgaagcctttcaaattcaaccacccccagggcttc
ttcaatcacagatga
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