Polyodon spathula (Mississippi paddlefish): 121300051
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Entry
121300051 CDS
T07273
Name
(RefSeq) rab5 GDP/GTP exchange factor-like
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121300051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121300051
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
121300051
Protein recycling
Other Rab GTPase associated proteins
121300051
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VPS9
zf-A20
DUF5601
Myelin_MBP
CEP104-like_TOG
DivIVA
Motif
Other DBs
NCBI-GeneID:
121300051
NCBI-ProteinID:
XP_041084342
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All DBs
Position
25:16884110..16895286
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AA seq
438 aa
AA seq
DB search
MWEAHRGIHVDQSELLCKEGCGYYGNPAWQGYCSKCWRKRNRNQPDQKRDTGPCPSVEGG
KPLTFSKFEEKKSSEMSRRVNTMKRLFGGSRTPPKRGSEPAETQSVTSTAPQKSQPGDFT
EFLKSLRKPSTQVLHRRCTAFLSSLESQRYLPVQKQSDLVQDFYQSIAGHFQSFPEEQSA
LMMEHIEKLIMTRLYKWVFCPDSSDDEHRDLTLQRRIRALHWVTPQMLRIPVGEGRSEVN
DHFLSAITAIIGMDAKRAPQDKLSCVFKCSQSIFTALASSNPEPANADDFLSGLIHVVLK
ANPPRLHSNMQYIIRFGLPHSLMAGESGYYFTNLCCAVTFIEKLNGPSLNLTPEQFEGYM
QGRKPAERESPVSEPESEGLQLAKKNRELLREIEKRQERVALGVREMEEELGKWVQSVQA
QVQEIKANAALDVISTKS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtgggaggcgcacagagggatccatgttgaccagtcagagctgctgtgcaaagagggc
tgtggttactatggtaacccagcatggcaggggtactgctccaaatgctggcggaagaga
aacaggaatcaacctgaccagaagagagacactgggccttgtcccagtgtggaggggggg
aagcccctgaccttctccaagtttgaggagaagaagagcagtgagatgagccggcgtgtc
aacaccatgaagagactcttcgggggctccagaactccccccaagagagggagcgaaccg
gctgagacccagtcagtcacctcaacagcacctcaaaaatcacaacccggggacttcact
gaattcctgaaatccctacgtaaaccctccacccaggtcctacaccggcgctgcactgcc
tttctcagcagcctagaatcacagcggtaccttccagtacagaagcagtcagacctggtc
caggatttctaccagagcatcgcaggacactttcagagcttcccagaggagcagagtgcc
ctgatgatggagcacatcgagaagctaatcatgacgcggctgtacaagtgggtgttctgt
ccagacagctcggacgatgagcacagagacctgaccctgcagaggagaatacgagcactc
cactgggtcaccccacagatgcttcgcatcccagttggcgagggtcgctctgaggtcaat
gaccacttcctctcggccatcacagcaataatcgggatggacgctaagcgtgcccctcag
gacaagctctcctgtgtgttcaagtgcagccagagtatcttcactgccctggcctcctcc
aaccctgagccggccaacgcagacgacttcctgtcggggctgatccacgtggtgctgaaa
gccaaccctccccgcctgcactccaacatgcagtacatcatccgcttcgggctgccacac
agcctcatggccggggagtctggatactacttcaccaacctgtgctgcgctgtcaccttc
attgagaagctgaacgggccgtctctgaacctgacccccgagcagtttgaggggtacatg
cagggcaggaagccggcggagcgggagagcccggtttcggagccagagtctgagggtctg
cagctggccaagaagaaccgggagctgctgagggagattgagaagcgacaggagcgggtg
gcgctgggggtgcgagagatggaggaggagctggggaagtgggtgcagtctgtgcaagct
caggtgcaggagatcaaagcaaatgctgctctggatgttattagcacaaagagttag
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