Polyodon spathula (Mississippi paddlefish): 121300136
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Entry
121300136 CDS
T07273
Name
(RefSeq) transcription factor SOX-13-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121300136
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121300136
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
AAA_23
Motif
Other DBs
NCBI-GeneID:
121300136
NCBI-ProteinID:
XP_041084498
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Position
25:complement(6624617..6649387)
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AA seq
607 aa
AA seq
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MCDSSPTSLCRRGNGDVTMVGLSVKLEEEEAEVGRAPSRDTRRTSPCDWSLQPPSRGGTP
RNTHTPSDGSPGRGRTHGPSPGPVQIPHERLELNQNMSEVMPTIEKLLSSEWRDKILGNN
KELKGTPDSLAEKELQLLVMINQLSSLRDQLLGAHSEQRNMAAMLFEKQQQQMELSRQQQ
EQIAKQQQQLIQQQHKINLLQQQIQQVNMPYVMIPAFHHNTQAHPVPSDPQMGLPIQPIP
CKPVDYPMHLLPNPHPTPVKRSNGPVHMQEGPQPLNLTSKPKSQELGKAPSPQSMDLGQG
HLPAGYRPPLDLQHSPSRSGLTLGFLGEGDAVTKAIHEARQLLRSHGAGGRERDSAGRKD
GSRGEACLLRERTEECQPQHRAADDSSDSEAGGLSAAGSVGFPDSRAPSAGHIKRPMNAF
MVWAKDERRRILQAFPDMHNSSISKILGSRWKSMSNQEKQPYYEEQARLSRQHLERYPDY
KYKPRPKRTCIVEGRRLRVGEYKAMMKSRRQEGRPGGYTESQPEQLHYPSAEAPPYPCQP
VSMTTLAMQSTVLERYLPRVLEPHGLRPVGGEERDRGPPPAERHPNSEGEESDTGERSEG
ELVVLTD
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgattcgagccccacctctctgtgtcgccgcggcaatggggatgtgaccatggtg
ggcctcagtgtgaagttggaggaagaggaggctgaggtgggcagggccccaagccgtgac
actcggcgaacctcgccatgtgattggtcactgcagccccccagcaggggcgggacaccg
cgcaacacacacaccccctcagacggctccccaggcaggggacggacacacggacccagc
cctggcccggtccagataccccacgagagactggagctcaaccagaacatgagtgaggtt
atgccaaccattgaaaaactgctgagcagcgaatggagagacaaaatcctaggaaacaac
aaggagctcaaaggtacccctgatagcctggcggagaaggagctgcagctactggtgatg
atcaaccagctgtccagcctgcgggaccagctgctgggagcccactcggagcagaggaac
atggctgccatgctcttcgagaagcagcagcagcagatggagctttccaggcagcagcag
gagcagattgcaaagcagcaacagcagttaattcagcagcagcacaaaattaacctgctt
cagcaacaaatccagcaggtcaacatgccctatgtgatgatccccgcattccatcacaac
acgcaggcacatcctgtcccctctgacccccagatgggactccctattcagcccattcct
tgcaaaccagttgactatcccatgcatctgcttccaaacccccaccccacccccgtaaag
aggtcaaatggaccagtccacatgcaggagggtcctcagcccttgaacttgacctccaaa
ccaaaatctcaggagctgggaaaggcccccagtcctcagtcaatggatctgggacagggg
cacctgccagcgggctacagaccaccccttgatctgcagcacagcccgtctagatccggt
ctcactctggggttcctgggcgagggagacgctgtcacgaaggcgatccacgaagcgcgc
cagctactccggagccacggcgcaggcgggagagagagagacagcgccggcaggaaggat
ggatcaagaggggaggcatgccttctgagagagaggacagaggaatgccaaccccagcac
cgagctgccgacgacagcagcgactcggaagcaggaggactgtcggcagccggctccgtg
gggttccccgactccagggcaccctccgctggacacatcaagaggccgatgaacgccttc
atggtgtgggccaaggacgaaaggcggcgcatcctgcaggcttttccagacatgcacaac
tccagcatcagcaagatcctcgggtcgcgctggaagtcaatgtcgaaccaggagaagcag
ccctattacgaggagcaggcacggctgagccggcagcacctggagcgttaccccgactac
aagtacaagccgcggcccaaacggacctgcatcgtggaggggcgccggctgcgcgtcgga
gagtacaaggccatgatgaagagccggagacaggaggggcggccagggggctacacagag
agccaaccagagcagctgcattacccctcagcagaggccccgccctacccttgtcagccg
gtctccatgacgacgctggccatgcagtccaccgtgctggagcgctacctcccacgtgtc
cttgagccacacggcctgcgaccggtcgggggggaggagagggataggggaccaccccct
gcggagagacaccccaacagtgagggagaggagagcgacacaggggagcgcagtgagggg
gagctagtggtgcttacagactga
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