Polyodon spathula (Mississippi paddlefish): 121300147
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Entry
121300147 CDS
T07273
Name
(RefSeq) hepatocyte nuclear factor 1-alpha-like
KO
K08036
transcription factor 1, hepatocyte nuclear factor 1-alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121300147
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
121300147
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
HNF-1A_C
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
121300147
NCBI-ProteinID:
XP_041084522
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Position
25:21604595..21612870
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AA seq
612 aa
AA seq
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MGQSKRRLSEIAMVTRLTTLQQELLSALLGSGLSKQTLLEALGEMEACRPPQAEESPLEE
GGGEPRLGGGEDSSEEEGEEFTPPIFKELEALSPEEASRQRAMVDRFLQQDSWHVAKLVK
SYMQQHNLPQREVVDSTGLNQSHLSQHLNKGTPMKSQKRAALYTWYVRKQREISQQFTNA
SQGLLGDDPTEELTNKKVRRNRFKWGPASQQILFQAYERQKNPSKEEREALVEECNRAEC
IQRGVSPSQVHGLGSNLVTEVRVYNWFANRRKEEAFRHKLAMDSYGSQLPPPHSTASGSQ
AGAHNSNPLNTAGLSASPTHGVRYSEEQANEGLTSSISHHGNSGMVTTQSILQSVSPPGL
EPSHNLLSNDCKPVSAAGGTLPPVSTLTALHSLLPHSAHSHPQTQGLIMASLPSVMTIGP
GESSFVIGLASTQSQNIPVINSVGGGLTALQPVQFQQQLHHGHQQPIMQQFQSHMAQNSF
MATMAQFQSPHTYSHKSELPQYAPTSLFPQTMVITDTGNLSTLTSLTAIKQILTSDPDSQ
SNAPTHTPVSHSQDGTLHLLQGSPPVAVSSAGSLVMYQTQQGNESHPHLLQPPLGTIETF
LPAQMTSSSSSQ
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgggacagagcaagaggaggctgagtgagatcgccatggtcacccgcctgaccaccttg
cagcaggagctgctgagcgctttgctggggtcggggttgagcaagcagacgctgctggag
gctctgggggagatggaagcctgcaggcccccccaggccgaggagagccctctggaggag
ggggggggcgagccgcggcttggggggggggaggacagctcggaggaggagggggaggag
ttcaccccccctatattcaaggagctggaggctctgagcccggaggaagcaagccgacag
agagccatggtggacaggttcttacagcaggactcgtggcacgtggctaagctagtgaag
agctacatgcagcagcacaacctcccccagagggaggtggtggattccaccggactgaac
cagtcccacctctcccagcacctcaacaagggcactcccatgaagagccagaagagggca
gcactgtacacctggtacgtgcgcaagcagagagagatcagccagcaattcaccaatgcc
agccagggactgctgggggacgaccccaccgaggagctgaccaataagaaggtgcggagg
aacaggtttaagtggggccccgcctcccagcagattctcttccaggcctacgagagacag
aagaacccgagcaaagaggagagggaggcgctggtggaagagtgcaacagggcggagtgt
atccagcgtggcgtgtccccctctcaggttcatgggctgggctctaacctggtcacggag
gtgcgggtgtataactggttcgctaaccggcgcaaagaggaggccttccgtcacaaactg
gccatggactcgtacgggagccagctcccccctccccacagcacagcctctgggagccag
gctggagcacacaacagcaaccccctcaacactgccggcctctcagccagccccacacac
ggagtaaggtacagtgaagaacaggccaacgaagggctgacatccagcatcagtcaccat
ggaaacagcggcatggttaccacacagtccatactgcagtctgtgtctcctcccggcctg
gagcccagccacaacctgctgagcaacgactgcaaaccggtgtcagctgcaggagggacc
ctgcccccagtcagcaccctgactgcactgcacagcctgctcccccactccgctcactca
cacccccagacccaggggctcatcatggcctcgctgcccagcgtcatgaccatcggcccg
ggggagtcctccttcgtcataggcctcgcctccacgcagtctcagaacatccccgtcatc
aacagcgtggggggcgggctcacagctctccagccagtgcagttccagcagcagctgcac
cacggacaccagcagccaatcatgcagcagtttcagagtcacatggcccagaactccttc
atggccaccatggcgcagttccagtccccgcacacgtacagccacaagtcagagctgccc
cagtacgcccccaccagcctcttccctcagaccatggtgatcacagacacagggaacctc
agcactctcaccagcctgaccgccatcaaacagattctgacctcggatcccgacagccag
tcgaatgctccgacccacacgcccgtgtcgcactcccaggacgggaccctccacctcctg
cagggcagcccacctgtggcagtgtcctctgcaggcagcctggtgatgtatcagacccaa
cagggcaacgagagtcacccccacctcctgcagccccccctgggcaccatagagaccttc
ctccctgcgcagatgacctcctcctcctcctcacagtag
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