Polyodon spathula (Mississippi paddlefish): 121300200
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Entry
121300200 CDS
T07273
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121300200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121300200
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121300200
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121300200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
ANCHR-like_BBOX
RING_XB3-XBAT31
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
121300200
NCBI-ProteinID:
XP_041084631
LinkDB
All DBs
Position
25:5333996..5335747
Genome browser
AA seq
583 aa
AA seq
DB search
MAYSTAESLFREDLSCPICLQLFSEPAMLPCGHNFCASCIEGVIEGEAGRGQHTCPECLC
EYNGQTALQRNFKLCSIVEGFKASEGASSPVLCDVCLETPDPAVRACLKCEISMCALHLK
PHLEKKTFESHSLVEPKSDLGVKACPVYEEVGKFDCFEDKSCTVKGRLKKYNLKKACSEM
KGGLQSKMKIMTEKLQQAQSFFEKGVVNGTSVKAADVKNGQTESAEVKVDLESEIVKKIH
LAESLLQKGKKNKASVKVSSAELKQNVSGLFDRIAQLVCTYKEGMVEMIEDEQRYLVESL
ERSTDYITKQQHLCREIQQQADSVSAETDQFQFIQKHQQIQAKLKAALETPLNEKDVTSQ
AMHNKKLIESLERAFVEFQAEIRNSHQDLKVLIYPSELTLDPHTAHCALSLSDDLKTARY
TPTKQPYPDLPERFDHWRQVLCFQGFSSGEHYWEVDTGEGFWHVGICYRSMARKGSGTDS
KLGCNKASWTVELHGKLSAWHKNVCTRLQVSTEPTRLGVHLNYDAGTLTFLSVSDKQTYL
HTFRTRFTEPVYPAFWIQSGTATSWVTVRSTSDRDFQTYANAS
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcgtattctaccgcagaaagtctctttcgagaagacctgagctgccccatctgcttg
cagctcttttccgagccggctatgcttccctgtggtcacaacttctgtgcttcgtgtatc
gagggagtgattgaaggagaagctgggagaggacagcacacctgccctgaatgcctgtgt
gagtacaatgggcaaactgcactgcagagaaacttcaagctttgcagtattgtggaggga
ttcaaagccagtgagggtgcctcctctccagtgctctgtgatgtgtgcttggagacccca
gacccagctgtcagggcgtgtctcaagtgcgagatctcaatgtgtgctctccatttaaaa
ccgcatttggaaaaaaagacgtttgaaagccactccttggtggagcccaagtccgacctc
ggtgtcaaagcatgtccagtgtatgaagaggttgggaagtttgattgctttgaagacaag
tcctgcaccgtcaaaggtaggctcaagaaatacaatttgaaaaaagcttgttctgaaatg
aagggtggactccagtcaaagatgaaaataatgacagagaagcttcagcaagcgcagagc
ttcttcgagaagggggtcgtcaatggaacatcagttaaagctgccgatgtgaaaaatggc
caaactgaatctgctgaagtgaaggtggacctggaatcagagattgtaaagaaaatacat
ctagcggagagccttctccagaaggggaaaaagaataaagcctctgtgaaagtttcaagc
gcagaattgaaacagaatgtgtcgggcctgttcgacaggatcgctcaacttgtttgcact
tacaaggaagggatggtagaaatgatagaagacgaacagcgctaccttgtggagagcctg
gagcgcagcactgactatatcacaaagcagcagcatctctgcagagagatccagcagcaa
gcggactctgtctcggccgaaacggaccaattccagttcattcagaagcaccagcaaatc
caagcaaaactaaaagcagcgctggaaacccctttaaacgagaaagacgttaccagtcaa
gcgatgcacaataagaaacttattgaaagtctggaaagggcatttgttgagtttcaagcc
gaaattagaaattcacaccaggatctgaaggttttgatttacccctcagagctcacgcta
gacccgcacacagcccactgtgcgctgtctctctctgacgatctcaagactgccaggtac
actcctacgaaacaaccttacccggatctcccagagaggtttgatcattggcgtcaggtc
ctgtgtttccagggcttctcgtccggagaacactactgggaggtggacactggggagggc
ttttggcatgtgggaatctgctacaggagcatggcaaggaaaggcagtgggacggattct
aaattagggtgcaataaagcatcctggactgttgagctgcatgggaagctgtctgcttgg
cataaaaatgtgtgcactcgccttcaggtgtccaccgagcccaccaggcttggagtgcac
ctcaattatgatgcagggactctgacatttctcagtgtgtctgacaaacagacctatctg
cacacatttagaacaagattcacagaacccgtttatccagcgttctggattcaatccggc
acagccacgtcctgggtaactgtaaggagtacttcagacagggactttcaaacatacgca
aatgctagctag
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