Polyodon spathula (Mississippi paddlefish): 121300231
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Entry
121300231 CDS
T07273
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121300231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121300231
03036 Chromosome and associated proteins [BR:
pspa03036
]
121300231
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121300231
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
121300231
Chromatin remodeling factors
BAF complex
121300231
PBAF complex
121300231
GBAF(ncBAF) complex
121300231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
121300231
NCBI-ProteinID:
XP_041084665
LinkDB
All DBs
Position
2:complement(73288202..73340044)
Genome browser
AA seq
1575 aa
AA seq
DB search
MSTPTDPSGGMSHPGPSPGPGLSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVGHNIPN
QGSGDYSQDSMHQMHKLMEGMHDKGMGEEMHFGQMKGMGMRSLHAGMGPPQSPMDPHSQG
YLSPHPSPMGVPEHVPSPMSGGGPTPPQMTPTQTGPMMPVDPQVMAQQQSRSASFSSVQL
QQLRAQILAYKILGRGQPLPENLQLAVQGKRTLPVMQQQQVSSAYNRPPGMGMHAMSVPQ
AGPSSAQGMPGHVPNMGPKPWPEGQSADVPSTPQKLPVPATSGRPSPAPLQAPSSAAAMP
GTSLPQQPPGQPSSTIQLQQKQNRITPIQKPQGLDPVEILQEREYRLQARIAHRIQELEN
LPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVVCMRRDTTLETALNSKAYKRSKRQTL
REARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLSKAIATW
HTNTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTDL
VYEHKAAQAAKEKKKKKKKKKKVEDIGEGMDSSLGPDGEPIDESSQMSELPVKVIQTETG
KVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSEESESEYEEEDDEGELSRPESEERKILD
PNSDEVTERATSQIIESVKQDVDDEYRMQTGEICIQSYYGVAHAVTERVEKQSSLLVNGS
LKHYQVQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLS
TLSNWVYELDKWSPSVVKISYKGTPAMRRSLLGQLRSGKFNVLLTTYEYVIKDKQILAKI
RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIF
KSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVE
YVVKCDMSAIQKVLYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLKKICNHPYMFQ
HIEESFAEHLGYPNGIISGPDLFRASGKFEVLDRILPKLRVTNHRVLLFCQMTTLMTILE
DYFAYRNFLYLRLDGTTKSEDRAALLKKFNCPGSQYFIFLLSTRAGGLGLNLQAADTVVI
FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGM
FDQKSSSHERRAFLQAIMEHEEQNEDEDSVRTAMEEDEVPDEETLNQMIARNEEEFDLFM
RMDLDRRREEARSHKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEDKLFGRGSRGRRDV
DYSDALTEKQWLRAVEDGNLEEMEEEIRLKKRKRRRHVDKDPGKEEGEKLKKRRGRPPAE
KLSPNPPKLTKQMNAIVDTVINYKDGASRQLSDVFYQLPSRKELPEYYELIRKPVDFKKI
KERVRNHKYRSVGDLEKDIMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEDES
DEDSVDDEDEEDEESESESKAVKVKIKLGKKEEKRHDKGKKRQSRIKAKPVVSDDESEEE
QDDNDQSDGSGSDDE
NT seq
4728 nt
NT seq
+upstream
nt +downstream
nt
atgtctacacctacagacccgtcgggtggaatgtcccaccctggcccttctccagggcca
ggtctgtctcctgggcctattttaggtcccagccctggaccaggtccttctccagggtca
gtccacagcatgatggggccaagtcccgggccacccagtgttggacacaacattccaaac
caaggatctggagattattcacaagatagcatgcaccagatgcacaagctgatggaaggt
atgcacgacaagggaatgggggaagaaatgcattttggccagatgaagggaatgggaatg
agatcacttcatgctggaatgggcccaccacagagtcctatggatccgcatagccagggt
tacttgtcccctcacccatcacccatgggtgttcctgaacatgttcccagtccaatgtca
ggaggtggtcccacacccccccagatgactcccacccaaacaggccctatgatgcctgtg
gatccccaggtgatggctcagcagcagagtcgcagtgcttctttcagttcagttcagctg
cagcagcttcgggctcagatcctggcttataaaatccttggcagggggcagccgttacca
gaaaacctgcagcttgcagtacagggaaagagaacactgcctgtgatgcaacagcaacaa
gttagttctgcctataataggccacctggtatgggtatgcacgctatgagtgtgcctcaa
gcaggaccatcttcagcacaaggaatgccaggacatgttcctaatatgggtcctaagcca
tggccagaaggccagagtgcagatgtcccgagtactcctcagaagcttccagtgccagct
acaagtggaaggccttctcctgcacccctgcaggctcctagctctgctgcagctatgcca
ggaacctcgctgccccagcagcctcctggccagccatcttccactattcaactccagcaa
aaacagaaccggataacacccattcagaaaccacagggcctggaccctgtggagatactt
caagaacgggagtacaggcttcaagctcggattgctcatagaattcaagaacttgagaac
ttgcctggttctttgccaccagatttgcgaacaaaagctactgtagagttgaaggcctta
agacttttgaatttccagcgccagttgaggcaggaggtggtagtatgcatgcgccgggac
actactttggagacagccctgaactcaaaggcatacaagcggagtaagcgccagactttg
agagaggcccgtatgacggaaaagctggagaaacagcagaagattgaacaggagagaaaa
cgcaggcagaagcaccaggaatacctaaacagcattctgcagcatgcaaaagatttcaaa
gaatatcaccgttctgttacgggcaaaattcagaaactttccaaagccattgctacctgg
cataccaacacagagagagaacagaagaaggaaacggagcggattgagaaagaaagaatg
aggaggctgatggcggaagatgaagaggggtaccgtaaactgattgaccagaagaaggat
aagcgcttggcatacctgctacaacagactgatgaatacgtggctaacctgactgacctg
gtctatgagcacaaggcagcccaggctgccaaagagaagaagaagaagaagaaaaagaag
aagaaagtagaggacattggagaaggaatggatagtagcctgggccctgatggagagcca
atagatgaaagcagtcagatgagtgaacttccagttaaagttattcaaacggaaactggc
aaagtcttacaaggaacagatgcaccaaaatccagtcaattggaggcctggctagaaatg
aatcctggctatgaagttgctcctcgttcagacagcgaagaaagtgaatcagaatatgag
gaagaggacgatgaaggagagctttcaagacctgaatcagaagaaaggaagattcttgat
ccaaacagtgatgaagttacagaaagagctaccagccaaatcattgagtctgtcaagcag
gatgtagatgatgaatatagaatgcagactggagaaatatgcatccagtcatattatgga
gtggcccatgcagtcacagaaagggtggaaaaacagtcttctctattggttaatggaagt
ttgaaacactatcaggttcaaggtttggaatggatggtttccttatataataacaatctg
aatggaatcctagctgatgaaatgggtcttggaaagaccattcagaccattgctctcatc
acttacctgatggaacacaagagactcaatgggccctaccttatcatagtgccgctttca
accttgtccaactgggtgtatgaactggataaatggtcaccttctgtggtgaagatttct
tataaggggacaccagcaatgcggcgctcacttcttggacagcttcgaagtgggaagttc
aatgttcttctgaccacatacgagtacgttataaaggataaacagattcttgctaagatc
cgctggaagtacatgattgtagacgaggggcatcgcatgaagaatcaccactgtaagcta
actcaagtgctcaacacccattacgtcgcccctagacgactcctcctgacaggaacccca
cttcagaataaactccccgaactctgggctctgctgaacttcttgttgcccaccatcttc
aagagctgtagcactttcgaacagtggttcaatgcccccttcgccatgactggagaacgg
gttgatttgaatgaggaggagactattcttattatccggcgtctgcacaaagttctgaga
cccttccttctgaggagactgaaaaaagaagtcgaatcgcagttacctgaaaaggtggag
tatgtggtcaaatgtgacatgtcagctatacagaaggttctgtaccggcatatgcaagcc
aaaggcatactgctcacagatggctcggagaaagacaaaaagggtaaaggaggagccaag
acccttatgaacaccatcatgcaactgaagaagatttgtaaccacccctatatgttccag
catattgaggaatcatttgcagaacacctgggctacccgaatggtatcatcagcggacct
gacctgtttcgagcctctggcaagtttgaggtactggatcgcattctgccaaagctgaga
gtaacaaaccacagagttcttctcttctgccaaatgactaccctgatgaccattctggaa
gactattttgcttaccgcaactttctctacctgcgcctggatggtacaacaaaatcagag
gatcgtgctgctctgctgaagaagttcaattgtccaggctctcaatactttattttcctg
ttaagtacaagagctggaggccttggtttaaatcttcaggccgctgacactgttgttatt
tttgacagcgactggaacccacatcaggacttgcaagcccaggacagggctcaccgcatt
ggacagcagaacgaggtgcgagttctgcgtctctgtactgtaaatagtgtggaggagaag
atcttggctgctgccaagtataagctcaatgtcgatcagaaggttattcaggcaggaatg
tttgaccagaaatcttcgagccatgagcgaagggcctttcttcaagctattatggagcac
gaggagcaaaatgaggacgaagacagcgtccggacagcaatggaagaagatgaggttccc
gatgaggagaccctcaatcagatgattgctcgaaatgaggaagagtttgacctcttcatg
cgtatggatctggatcgtcgccgtgaagaggcacgcagtcacaagcgaaagccccgcctg
atggaggaggatgagctgccatcttggattattaaggatgacgcggaggtggagagactg
acatgtgaagaggaagaagataagctatttgggaggggctctcgtggccgcagagatgtg
gattacagtgatgcgctcactgagaagcagtggctaagggcagtggaggacgggaacttg
gaggaaatggaggaggaaatccgccttaagaaacgcaagcgtagacgacatgttgataaa
gatcctggaaaggaggaaggagaaaaactgaagaagaggcgaggtagacctccagcagaa
aagctctctccaaacccacctaaactgacgaagcagatgaatgccattgttgatactgta
ataaattacaaggatggagcgagtcgccagctaagcgatgttttctaccagctcccatct
agaaaagaactccctgaatattacgagttgatcagaaaacctgtagacttcaaaaagata
aaggaaagagttcgtaaccacaaataccggagtgtaggagacctggagaaggatatcatg
cttctgtgtcacaatgctcagactttcaatctggagggatcacagatctatgaggattcc
attgttcttcagtctgttttcaagagcgccaggcagaagattgctaaagaagatgagagt
gatgaagacagtgttgacgatgaggatgaagaagatgaggaatctgaatctgagtccaaa
gcagttaaggtaaaaatcaagcttggtaagaaagaagagaagaggcatgacaaaggcaag
aagcgacaaagtcgaataaaagcaaaaccagttgtgagcgacgatgagagcgaggaagag
caagatgataatgaccaatcagacggaagtgggagtgacgatgagtga
DBGET
integrated database retrieval system
