Polyodon spathula (Mississippi paddlefish): 121300295
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Entry
121300295 CDS
T07273
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121300295
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121300295
Spliceosome [BR:
pspa03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
121300295
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
CMS1
AAA_19
AAA_22
Motif
Other DBs
NCBI-GeneID:
121300295
NCBI-ProteinID:
XP_041084738
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All DBs
Position
25:complement(512103..520757)
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AA seq
789 aa
AA seq
DB search
MAVRMQKAAHDVQSRRRTDDVLQSEGVDFSALLLSQPVLSGLAAAGFQSPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFTTIALDSLVVENPATQVLVLAPTREIAVQIHSVITAVGI
EIEGLQCHVFIGGTPVSLDMTRLKKCHIAVGSPGRVKQLIEMGCLPTASVRMFVLDEADK
LLEEGSFQDQINWIYSSLPVNKQMLALSATYPESLAQHLARYMRDPTFVRLNPSDLGLLG
LKQYYKIVKSHPLPHKIFQEKVQHLLELFSKIPFNQALVFSNLHSRAQRLADILTSKGLP
AVCISGSLTQDQRLEAMSKLKQYKCRVLISTDLTSRGIDAEKVNLVINLDVPQHWETYMH
RIGRAGRFGTHGLAVTYCCHGEEENEMMTIAQKCSLNLSCLPDPLPPGLMEEPSDWDVTF
ESVQTLPHIPAASPKLKENQDQGLQIEGIASPFPSRGAEPPNTQPFSLGKPKKPVQPRTI
QTDPTPRKPVNISVLRNVSTSPLTPMELREKSQSLSIQDQAALQDVLPKISPLPSFKAKP
RCMRPVSLAELTEDYESFIKDGPGRTVEIIRRYTGSNDAGQQTVEEVKVKDGVEQGVPQA
VSRDYERESSFNAQLSSYSDRSTSSEDDEDSRGVDREALGEPMEVSMPIQRSVEKISASP
RAVPKPSARNRCVFAEASSEHARGKTGIPKHRAGLDPCPEPPRQKAKARGKSRAEESQLG
AEDHEESLDRGYEQPGQDSPQEYWKAYFEAWHRYYAAVGQPLHRGCRRYFNWMSVYQMNS
VYMEELLKH
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggctgtccggatgcagaaggcggctcatgatgtccagtcccggaggcgcaccgatgat
gttttgcagtccgagggggtggatttcagcgcgctgctgctgtctcagcctgtcctgtcg
ggtctcgccgctgcgggctttcagagcccgtccccgatacagctgaaggccattccgctg
ggaagatgcgggctcgatcttattgtacaggccaagtcagggactgggaagacgtgtgtg
tttaccaccatcgctctggattcgctggttgtggagaatccagcgacacaggtgctggtc
ctcgcccccaccagagagatcgcggtgcagatccattctgtcatcacggcggtcggcatt
gagatcgagggcttgcagtgtcatgtgttcataggagggacccctgtgagtctggacatg
accaggctgaaaaagtgtcacattgctgtgggctcaccaggtcgtgtaaagcagctgatc
gagatgggctgtctccccacagcgagcgtccgcatgtttgttctggatgaagctgacaaa
ctgctggaggaaggcagctttcaagaccaaatcaactggatctattcatccctccctgtg
aataagcagatgctggctctctctgccacgtaccccgagtccctggcacagcacctcgcc
cgctacatgagggaccccaccttcgtacgcctgaaccccagcgacctggggctgctcgga
ctgaagcagtattacaaaattgtgaaatcccacccgctgcctcataagatcttccaagag
aaagtgcagcatctcctggagctcttcagcaagataccgttcaaccaggcgctggtcttc
tccaacttacacagcagggctcagcgcttggcagatattctcacttcaaaaggcctcccc
gctgtgtgcatttcaggcagtctgactcaggaccagagactggaagccatgtcgaaactg
aagcagtataaatgcagagtcctcatctctacagacctgacatcccgagggatcgatgca
gagaaagtgaacctggtgattaacctggacgtgccgcagcactgggagacttacatgcac
cgcatcggaagagccggccgcttcggtactcatggcttggcagtgacgtattgttgccat
ggcgaggaggagaatgaaatgatgaccattgctcagaagtgcagtctgaacctctcctgc
ttgccagaccccctcccaccaggattaatggaagaaccctctgactgggatgttaccttt
gaaagtgtccaaaccttaccgcatatacctgcagcctctcccaagctcaaggagaatcag
gaccaaggacttcagatagaaggcattgcaagccccttcccttccaggggggctgaacct
cccaacactcaaccattctccctggggaaacccaagaaacctgtccagccccgaaccatc
cagacagatcccacccccagaaagcctgtcaacatctccgtgctgagaaacgtttctacc
tctccgttaacccccatggagctccgagagaaatcccagagcctctccatccaggaccag
gcagctctgcaagatgtactgcctaaaatctccccgctgccctctttcaaagccaagccc
cgctgcatgagacctgtgagccttgcagagctgactgaagattacgaaagctttataaaa
gatgggcccgggagaacagtggagattatcagacggtataccggttcgaatgacgctggc
cagcagaccgttgaagaggtcaaggtgaaagatggtgtagagcaaggggttccgcaggct
gtttctagggactacgagagggagagcagcttcaacgctcagcttagttcgtacagtgac
aggagcacctcctctgaggacgatgaggattccaggggcgtggaccgggaagctcttgga
gaaccaatggaggtttcaatgccaattcaacgttctgttgagaagatctcagcctctcca
cgtgctgttcctaaaccaagcgctcgtaaccggtgtgtctttgctgaagcatcaagtgag
catgccaggggtaagactggcattccaaaacacagagctgggctggatccctgtcctgaa
ccaccacggcaaaaggccaaggcaaggggtaaaagcagagctgaggaaagccagcttggg
gctgaggaccatgaagaatccctggaccgggggtatgaacagcccgggcaggacagtcct
caggaatactggaaggcctattttgaggcttggcatagatactacgctgctgtggggcag
ccccttcacagaggctgccgaagatattttaactggatgagtgtgtatcagatgaactct
gtgtacatggaagagctgctcaagcattga
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