Polyodon spathula (Mississippi paddlefish): 121300451
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Entry
121300451 CDS
T07273
Name
(RefSeq) retinoic acid-induced protein 1
KO
K19749
retinoic acid-induced protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121300451
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
121300451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
121300451
NCBI-ProteinID:
XP_041084961
LinkDB
All DBs
Position
26:complement(10739569..10770679)
Genome browser
AA seq
1814 aa
AA seq
DB search
MQSFRERSGFHGNQQCYQQEAHELSRLENYRHHQSQTRQGYEAHALAAAKDCYSQQVYHG
YSNSTGADKQYKGAKIPAQHLQNSSSLTGYSNHLSNAYSAQYVSEGHMQQKWEDSSHLPQ
YEQELLGRLESPTSGGQYLEQNLHPISRSQCSHSTQQNPPVYTTHHQQKVQQVNSTSAMT
YTQGSLHFPQHSQSLSSSTPSYTVVDKCNQTSHCYKTYAMPSNSQYNRQLGSSNIKQSGY
RAQTSYSYQSTPARVGYEQQAPLQGMANTQDNLLKYQHYNPQQNYCLTDISVRSPEQYYQ
NCSPSSSHSPARSVGRSPSYSSTPSPLMVNPETFQYNQPPITTGASSSTNIRDQSLLMPS
HTHSSNHNLQPTSYVGSLKDRFSEKLLSNPSLWSLNALTSQVENISNNVQHLLLSEALIS
NKKGVKRTPKKTEDYKGQLRALEDGSEAQLATPASEPFSTPQSVHTEMQEGEYSSSSEDQ
LERIYYMCNQNRCPARVANNSHVILETVASCSVTSPDDMSTKSDDSLHSLQSGEPGENFT
ALTNHLGNDKFPKSQSASSPLKQEESSPAVVIKENFEESAWPDKMKTEKEEIKEPLVTDD
EKGGICALDQGGWLEEEKYPGFFHKLSKALISKSYPNSMEQKIYQDMQIQYVTDEGEDCE
KPSSPAEFNCGTAAGSDVEAELYNSDFTTDLNAAGKAVQFNWSDDLVQDQYLTMKEEVSN
YSHFNSGVEVCEEKLTAAEKENQEMYVEQCSVQLSESNKPSVINEKHSSLSPEETFKNQI
WTQESAESSSPEEDQDRGNQIPESKEQFLQSIIQEVAFSSTERRSVICNVSPKHPGLATP
KGPTLSQTSDNSDVEDSMMLAHDIPFLAAQSVIHSAPSWADTPPSSKKWDEEIELGIDCL
DEVPESFESESFDASAKLNELNRKHDEEKSNQPGRLMNTSVRIRRLSSLVGEGLPTAPQA
INMSSSKSTSSADQTEATSSNLSSQTPKCFAENPPSRMCTRSFTALGAPKASMHIQRHTG
PSLPKTVSSKDLLCHPADMFSKCLKHNGLKSIESYMKGKMIFSESCPNGEGQDITQSILP
LLKEQRPMVLRSRKQKQEKLLKEKIKEKRTLNFLPKKLKTPHKHKAAFLKSQVRASSKQN
TADSHRKVVYRIKNKTEKPAKNLLSTLKRKSSNSSPIPVKQHRGVKKGKGEALPAPLNNK
EVVAKTPKKKSRRGAHFKISLNNYLTKESPLIVSSVAPCIQAQYPAKTKYLPPRKGRGLK
YEAMVQKITSPGSKKNASTTCTGTTVANLMGALQSCEENEQIKEAQQLKPRDDADSQNVI
VKLEEIFVKGPPSKRRKLSLGKICECRSQNASAFETEANLVVGPRLAKQRAIKNNHEMHM
KQRRRKRKGIVSTVPEDNVVAVQHSSTPSLASSPPETELTTPTPVTIETSKCKRVNQRLS
HQKKKQVKYLDNKSRQNQKTIKKTGPIRKNRKHLNAVKTRKNGCRLKNRHKRQHAPIVED
KEPEIQLKNMSYKPQKDENKPPQFCPYIRIDKSKELSSICTIVNRPEEECQLLQTRKKNS
PRIKNCVAVAKVMPNSSVMQQGPLINKNLIDRCLSCCLCGKPANFRELGDLCGPYYPEDS
IPRKTQSFKCKTESGENRVKSICSSVQSEATEPETDKSSSSDVPGRPRKFDKLPGEHSGV
RSKFRDRYRKLHQFQGYNRKAVDTESNSLKEQDCSGPVSQHLELEAESKEHWVHEACVVW
SNGVFLIAGKLYGLQEAVLVASETNCLKCQESGATVGCCSKGCTQKFHYVCARDMGCLLR
EENVSLKCPKHKGV
NT seq
5445 nt
NT seq
+upstream
nt +downstream
nt
atgcagtccttcagagaaaggagtggtttccatggcaaccagcagtgctaccagcaggag
gcacatgaattatcacgccttgagaattataggcatcatcagagccagacaagacagggc
tatgaggcgcatgctcttgcagcagcaaaggactgttacagccagcaagtctaccatggt
tacagcaacagcacaggtgcagataagcaatacaaaggagcaaaaatcccagcccagcat
ctgcaaaacagctcgtccttgactggctacagcaaccacctcagcaatgcgtattcagcc
cagtatgtaagcgagggacacatgcagcaaaagtgggaagattcatcacatttaccccag
tatgagcaggagctcttaggaagactggagtctcccactagtggtggtcagtaccttgag
cagaacttacaccctatatcgaggagccagtgctcccattctacccagcagaacccccca
gtttataccacccatcaccagcaaaaagtccaacaagtcaactccacctctgctatgacc
tacacacaaggctccctccactttcctcagcactcccaatcgctctcctcctcaactcct
tcctacactgtggtggacaaatgcaaccaaactagccattgctacaaaacctatgccatg
ccttccaattcccaatacaacaggcaacttgggagtagcaatatcaaacaaagtggctac
agagcccagactagttatagctaccaatcgactcctgccagagttggctatgaacagcaa
gctcccctgcaaggaatggccaatacccaggacaaccttttaaagtaccaacattataac
ccccaacagaactactgcctgacagacatctctgtgaggtctcccgagcagtactaccaa
aactgcagccccagttcaagccactccccagctagatcagttgggagatctccctcctac
agttccacaccttctcccttaatggtcaacccagagaccttccagtacaaccagccaccc
atcactacaggggcttcgtcatccactaacatcagagaccagagtcttttgatgccttct
cacacccactcttccaatcataaccttcaacccaccagctatgtgggatctctcaaagac
agattttcagagaagcttctttctaacccaagcctttggagtctcaatgcactgacttct
caagtcgagaacatttctaataacgtccaacaccttctgctttccgaagcgctcatctcc
aacaagaaaggtgtcaaacgcacccctaaaaaaacagaggactacaaaggtcagctgaga
gctctggaggatgggtctgaggcacagctagccacaccagcgtccgaacctttcagcaca
cctcagtcagtccacacagagatgcaagagggagaatactcaagcagttctgaagatcaa
cttgagaggatctattacatgtgcaatcaaaacagatgtccagcccgggttgcaaacaat
tcacatgttatccttgaaactgtagcttcatgctctgtgacttcacctgatgacatgtcg
accaaatccgacgactcactgcacagcctccagagtggtgaaccaggagagaattttaca
gccttaacgaaccacctaggcaatgataagtttccaaagagtcagtctgcctccagtcct
ctgaaacaagaggaaagctcccccgctgtcgttatcaaggagaacttcgaagagtcagct
tggcctgataagatgaaaacagaaaaggaagaaataaaggagcctctagtcacagatgat
gagaagggtggcatctgtgcattagaccaaggaggctggctggaggaagagaaataccca
gggttctttcataaattaagcaaagcgttaataagcaaaagctaccccaatagcatggag
cagaaaatatatcaggatatgcaaatccagtatgtgacagatgagggggaagactgtgag
aagccctcaagccctgccgagtttaactgtgggacggctgcaggctctgatgtggaggct
gaattgtataattcagactttactacagatttaaacgctgctggaaaagctgtgcagttc
aactggagcgatgaccttgtacaagatcaatatttaaccatgaaagaggaagtgtccaat
tattcccactttaattcaggagtagaagtatgtgaagaaaagcttacagcagctgagaag
gagaaccaggagatgtacgttgagcagtgctctgtccagttgtcagaatcaaataaacct
tctgtgataaatgagaagcatagctcactatcccctgaagagacattcaagaaccagata
tggacacaggagtctgcagaatcgagtagtccagaagaagaccaggataggggaaaccag
atccctgaatctaaagaacagtttctacagtcaatcatccaagaggtagccttttctagc
acggaaaggagatcagtaatatgcaatgtttcacccaagcatccaggtttagcgaccccc
aaaggaccaacactgtcccagacaagtgacaacagtgatgtcgaggacagcatgatgctt
gcccatgacatacctttcttagctgctcagtcagtgattcactctgccccatcatgggct
gatacccctccctcttcaaaaaaatgggatgaagaaatagaacttggaattgactgtcta
gatgaagtgccagaatcctttgagtctgaatcatttgacgcgtcagcaaagctcaatgaa
ttaaacagaaagcacgacgaagagaaaagcaaccaaccgggaagattaatgaacacaagt
gttagaattaggaggctttctagtctggtaggagaggggttgccaacggctccacaagcg
atcaatatgtcatctagtaaaagtacatcttcagcagaccagacagaagcaactagcagc
aatctgtctagtcagacacctaagtgttttgcagagaacccaccatcaaggatgtgtact
cgatctttcacagccctgggtgcccccaaggcttctatgcatatacaaagacatacaggc
cctagtctacctaagacagtttcctcaaaagaccttctttgtcaccctgcagacatgttt
tccaaatgcttgaaacacaacggcctaaagtctattgaaagttacatgaagggcaagatg
atttttagtgagagctgcccgaatggagaaggccaggatatcacccagagtatattgcca
ctgctaaaagagcaacgaccaatggtattgaggtcaagaaagcaaaagcaagagaagcta
ctgaaagaaaaaatcaaagagaaaagaacgctcaatttcctgcctaaaaagcttaaaaca
ccgcataagcataaggctgcctttctgaaaagtcaagtgcgagcaagctctaaacagaac
acagctgactcccatcgaaaagtggtgtacagaataaaaaacaaaactgaaaaaccagcc
aagaatctgttatccactcttaagaggaagtccagcaacagctcacccatccctgtgaaa
caacacagaggtgtgaaaaaggggaaaggtgaggcgcttccagccccattaaataacaaa
gaggtggtggcaaaaactcccaaaaagaaatcacggaggggagcccatttcaaaatctct
ttaaacaattaccttaccaaagaatcacctctcatagtctccagtgttgccccttgcatt
caggctcagtaccctgctaagactaaatatctacccccaaggaaaggcaggggccttaaa
tatgaagccatggtgcagaagatcacatctccaggctccaagaagaatgcctctaccact
tgcacaggaactacagtggctaatctaatgggtgcattgcagagttgtgaagaaaatgag
caaataaaggaagcacagcagctcaagccaagggatgatgcagactcacagaatgtgatt
gtgaaactagaagaaatctttgtcaaaggccccccttcgaaaagaaggaaactgtcactt
ggcaagatctgtgaatgtaggagccaaaatgcctcagcctttgaaacagaagctaattta
gttgttggaccaaggctagctaaacaaagagcaatcaaaaacaatcacgaaatgcacatg
aaacaacggaggagaaagagaaaaggtattgtatcaacggttcctgaagataatgttgtc
gcagtccagcattcttcaaccccttcacttgcatcatctcccccggaaacagaactgaca
acacccacaccagtcaccatagaaacaagcaaatgtaaaagggtcaatcaaaggttatct
catcagaaaaagaaacaggtgaaatatttagataataagagcaggcaaaatcaaaagact
attaaaaaaacaggtccaatcagaaagaataggaagcatttaaatgcagttaagaccagg
aagaatggatgcaggctcaagaaccgacataaaagacaacatgctccaatagtagaagac
aaggagcctgagattcaattaaagaatatgtcatacaaacctcagaaagatgaaaacaag
ccacctcagttctgtccttatattcgcattgacaagtcaaaagagttgtcttctatatgt
accattgttaacaggcctgaagaagaatgtcagcttcttcagacaaggaaaaaaaactca
ccaaggataaagaactgtgtagcagttgccaaggtgatgccaaactcttctgtcatgcaa
caggggcctttgataaacaagaacctgattgacagatgtctatcttgctgcctgtgtgga
aagcctgcaaatttcagagagctgggagacctctgtggtccatactatccagaggacagc
ataccaagaaaaacgcaatcttttaagtgcaaaacagagtcaggagagaacagggtcaaa
tcgatatgtagctctgttcaaagtgaggctacagagccagaaacggacaagagcagcagt
agtgatgtccctggaaggcccaggaagtttgacaagttaccaggggaacacagtggtgtc
cgatcaaagtttagggacagataccgaaagttacatcagtttcaggggtacaacaggaaa
gctgtggacaccgagtcaaactccctaaaagaacaggattgcagtgggccagtctcacag
catttggagctggaggcagagtccaaagaacactgggtacatgaggcctgtgtagtatgg
agtaatggcgtgttcctcatcgctggcaagctgtatggacttcaggaagcagtactggtg
gccagtgaaacgaactgtttgaaatgccaggaatctggggctacagtaggctgttgttcg
aagggatgcacgcagaaatttcactatgtctgtgccagagatatgggttgcttgttgagg
gaagaaaatgtctcattgaaatgtcctaaacataagggcgtatga
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